Pairwise Alignments

Query, 500 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 290 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  142 bits (357), Expect = 2e-38
 Identities = 90/293 (30%), Positives = 153/293 (52%), Gaps = 11/293 (3%)

Query: 204 ILGQAFSGMSLGSILLLAALGLAITFGLLGVINMAHGEMLMLGAYSTYMVQLLMQRYMPQ 263
           +L    +G++ G++  L A+GL + +G+L +IN AHG  LML  Y+ Y        ++ +
Sbjct: 7   LLPSVLNGLTTGAVYALIAVGLTLIYGVLHIINFAHGASLMLALYAVY--------FLKE 58

Query: 264 AIEFYPLIALPVAFFVTAAIGMALERTVIRHL-YGRPLETLLATWGISLMLIQLVRLVFG 322
                P +ALP+A     A+G AL+R VI    +G+    LLAT GI++++  L  L+F 
Sbjct: 59  RWGIDPYMALPIAIVGMFALGYALQRIVINRAGHGKDENILLATLGIAIVMENLALLLFK 118

Query: 323 AQNVEVSNPEWLSGGVQVLPNLVLPYNRIVIIAFALCVVVLTWLLLNKTRLGLNVRAVTQ 382
           +    +     LS  V + P ++    ++V  A AL V  + + ++ +T LG  +RAV +
Sbjct: 119 SDTRSIDTAYSLST-VAIGPAMIA-VPKLVAFAGALVVSGVLFWIMGRTDLGRAIRAVAK 176

Query: 383 NRNMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGG 442
            +  A   G+    V  ++FG+G    G     L     V P +G  +++ +F +VVLGG
Sbjct: 177 EKEGAKLMGIDVDHVYAMSFGIGLACLGAAACFLLPAYYVNPQVGGGFVLVAFTIVVLGG 236

Query: 443 VGQLAGSVMAAFGLGIANKILEPQIGAVLGKILILALIILFIQKRPQGLFALK 495
           +G   G+++  F +G+   +    +G  LG+I I A+ I  +  RPQG+F  K
Sbjct: 237 MGSFVGALIGGFLVGVVESLGGLYLGESLGQIGIFAIFIGVVLFRPQGMFGAK 289