Pairwise Alignments

Query, 765 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

Subject, 820 a.a., peptidase from Pseudomonas simiae WCS417

 Score =  106 bits (265), Expect = 4e-27
 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 17/212 (8%)

Query: 9   LTPLLAAAVMLAGLRLWPHVPLEQAVTSSRVVLADDGSLLRMTLADDGQYRLWLPLERIS 68
           L+P L +   L  ++L   +PL +  +S   ++A+ G + R  +              I 
Sbjct: 30  LSPGLPSVEALRSIQL--QIPL-RVYSSDEKLIAEFGEMRRTPIR----------FADIP 76

Query: 69  PSLVEALLLKEDRNFYWHPGINPPALVRAAMATYSGGQRQ-GGSTLSMQLARRLWDLNTR 127
           P+ + ALL  ED NF  H G++P +LVRAA      G  Q GGST++MQ+A+  +  + R
Sbjct: 77  PNFISALLSAEDDNFANHYGVDPSSLVRAATQLVKSGHIQSGGSTITMQVAKNFFLTSER 136

Query: 128 QVPGKLQQMALALWLEARYSKHDILEAYLNLAPMGGNIEGAEAASRIYFGKSAAQLSLSE 187
               K  ++ LAL +E + +K +ILE Y+N   +G    G EAAS++Y+GKS    SL++
Sbjct: 137 SFSRKATEILLALQIERQLTKDEILELYVNKIYLGNRAYGIEAASQVYYGKSIRDASLAQ 196

Query: 188 ALALAVIPQQPGRRARFGPSLQHARQRLMADW 219
              +A +P+ P   +RF P    AR +   DW
Sbjct: 197 MAMIAGLPKAP---SRFNPLANPARSKERRDW 225



 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 12/202 (5%)

Query: 299 ILIDSRDQSVKALVGSADYLSTRLHGQVNGVLSRRSPGSTLKPFLYGLALDQGVIHPMSI 358
           + +D ++ +++ALVG   +  +  +       ++R PGS+ KPF+Y  ALD G     S+
Sbjct: 426 VSLDPQNGAIRALVGGFAFEQSNYN---RATQAKRQPGSSFKPFIYSAALDNGYT-AASL 481

Query: 359 LKDLPSNF------GYFQPENFDGSFVGPLTARDALIRSRNIPAVWLASQVKSPSLYGLL 412
           + D P  F        ++P+N   +F+GP+  R+AL +SRN+ ++ L   +        +
Sbjct: 482 VNDAPIVFVDEYLDKVWRPKNDTNTFLGPIRIREALYKSRNLVSIRLLQAMGVGKTIDYM 541

Query: 413 QRAGIKGLRDESHYGLALALGGGEMTPEELARLYVMLAGDGHLRPLRYLQEQPQSTGAQL 472
            R G    + +    L+LALG   +TP E+A  +   A  G+      + +     G  L
Sbjct: 542 TRFGFS--KSDLPPNLSLALGTATLTPMEIATGWSTFANGGYKIAPYLIDKIESRNGDTL 599

Query: 473 LTPQAAFMVRDMLRRNPRPDGL 494
            T     +  D++      DGL
Sbjct: 600 FTANPPRVPGDVVNGVAATDGL 621



 Score = 30.8 bits (68), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 502 AWKTGTSWGFHDAWSAGLVGPYVLVVWVGNFD-----GRPNPAFIGAKTAAPLFFRIADA 556
           A KTGT+    DAW +G    YV  VW G +D     GR      G   A P++     A
Sbjct: 691 AGKTGTTNESKDAWFSGYNADYVTTVWTG-YDQPESLGRRE---FGGTVALPIWMSYMGA 746

Query: 557 LPLALPNVVIKADKPPAGLVRIDVCAASG 585
              AL +        P G++ + +   SG
Sbjct: 747 ---ALKDKPPHTQPEPEGILSLRIDPVSG 772