Pairwise Alignments

Query, 765 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

Subject, 681 a.a., penicillin binding protein from Agrobacterium fabrum C58

 Score =  308 bits (788), Expect = 8e-88
 Identities = 214/564 (37%), Positives = 305/564 (54%), Gaps = 25/564 (4%)

Query: 29  PLEQAVTSSRVVLADDGSLLRMTLADDGQYRLWLPLERISPSLVEALLLKEDRNFYWHPG 88
           PLE A   S  VL  DG LLR     DG++RL      + P  +  L+  ED+ FY H G
Sbjct: 24  PLEAARERSFEVLDRDGKLLRAFATPDGRWRLKTTAAEVDPQFLRMLVAYEDQRFYDHHG 83

Query: 89  INPPALVRAAMATYSGGQR-QGGSTLSMQLARRLWDLNTRQVPGKLQQMALALWLEARYS 147
           ++P AL+R+A    S G+   G STLSMQ+AR +     R    K  Q A AL +E R  
Sbjct: 84  VDPWALLRSAWQLASNGRIVSGASTLSMQVARLIEPRADRSFSAKFLQAARALQIERRLD 143

Query: 148 KHDILEAYLNLAPMGGNIEGAEAASRIYFGKSAAQLSLSEALALAVIPQQPGRRA--RFG 205
           K +IL+ YLN+AP GGN+EG  AAS  +FGK   +L  +EA  +  +PQ P +R   RF 
Sbjct: 144 KAEILDLYLNIAPYGGNLEGVRAASLAWFGKEPGRLDTAEAALMVALPQLPEKRRPDRFP 203

Query: 206 PSLQHARQRLM---ADWRETYPQDPRNDSLLDLPLEARNRQQIPFLAPHLSEQLLAS-QP 261
            + + AR+R++   A  R     +    +L  +P+   NR+ +P  APH++    A  Q 
Sbjct: 204 EAAKQARERVLQRLAVERVVGEGEAERAALAAVPV---NRRDLPSYAPHMAVAARAKFQN 260

Query: 262 GNELNSTLNLPLQHLLERLISGFIAERRSTGVENATAILIDSRDQSVKALVGSADYLSTR 321
             E+ STL LP+Q  LE  ++   AE+    V  A  ++ D++   + A VGSADYL T 
Sbjct: 261 AGEVRSTLRLPIQRELEG-VARHAAEKLGDKVSVAI-VMADAQTGDILAEVGSADYLDTA 318

Query: 322 LHGQVNGVLSRRSPGSTLKPFLYGLALDQGVIHPMSILKDLPSNFGYFQPENFDGSFVGP 381
             G V    + RSPGSTLKPF+YGLA + G++   +I++D P++F  ++P NFD  + G 
Sbjct: 319 RRGFVEMSRAVRSPGSTLKPFIYGLAFEDGLVGQETIIEDRPADFSGYRPRNFDMHYQGD 378

Query: 382 LTARDALIRSRNIPAVWLASQVKSPSLYGLLQRAGIK-GLRDESHYGLALALGGGEMTPE 440
           ++ R AL  S N+PAV L   V   +L    +RAG+K  L      GLA+ALGG  ++  
Sbjct: 379 VSIRQALQLSLNVPAVKLLDAVSPSALMVRFRRAGVKLVLPANEAPGLAIALGGAGISLV 438

Query: 441 ELARLYVMLAGDGHLRPLRY---LQEQPQS-TGAQLLTPQAAFMVRDMLRRNPRPDGLPG 496
           +L +LY  LAG G   P+R    ++  P+   G +L +  A + V D+L     P G+  
Sbjct: 439 DLVQLYAGLAGSGD--PMRLGDGVRTVPERLEGDRLFSHAAIWNVTDILSGVLPPLGMKQ 496

Query: 497 RHWRTAWKTGTSWGFHDAWSAGLVGPYVLVVWVGNFDGRPNPAFIGAKTAAPLFFRIADA 556
           R    A+KTGTS+G+ DAWS G  G +V+ +WVG  D    P   G  TAAP+ F     
Sbjct: 497 R--GIAYKTGTSYGYRDAWSVGYDGRHVIGIWVGRADNGAVPGIAGYATAAPILFEAFAK 554

Query: 557 LPLALPNVVIKADKPPAGLVRIDV 580
             +A    V     PP+G+ R+ V
Sbjct: 555 SGVA----VTPMPGPPSGVARVAV 574



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 674 SDQSEAPQIRSPLTQVSYQLRLSQPQESIPLNANAASDAATLYWFADQTLIGQGPPHTTL 733
           S +  AP+I  P      ++ LS      PL        A   W A+   +         
Sbjct: 595 SRRESAPRIVYP--PEGARVELSSQSGISPLVLKLQGGRAPFRWLANGLPLPDASHRRNS 652

Query: 734 NWRPGKSGEYRLRVSDDQGRSASRGLKVE 762
            WRP   G   L V D  GR++S  + VE
Sbjct: 653 EWRPEGQGFSTLTVIDADGRASSVRIFVE 681