Pairwise Alignments

Query, 1464 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1385 a.a., Rhs-related protein from Pseudomonas putida KT2440

 Score =  722 bits (1863), Expect = 0.0
 Identities = 452/1208 (37%), Positives = 635/1208 (52%), Gaps = 82/1208 (6%)

Query: 185  CARHPPMPPQLLAEGSDKVTINGQPAVRSGDRSMCDATVVSSGLISPNVTIGGGTVVVQE 244
            C +HP   P  +AEGS  V IN   A R GD+  C AT+ S G  S NV IGGGT     
Sbjct: 102  CDKHPG--PVQIAEGSTNVFINSVAAARKGDKLTCGATI-SGG--SDNVIIGGGTYRYLP 156

Query: 245  IRSGKTPGVGLAIEALMMLKGAKGKTL------------SNLPCML------LAG--VTS 284
            +       +   ++ LM + GA G               + +PC L      +AG   + 
Sbjct: 157  VDDEVPEWLRTTVDVLMAIAGAAGGIAQLIKAGTQAGMKAVMPCALKFTAGFVAGEVASR 216

Query: 285  YAVSQAMGAAANATMGSPNPVHAATGAKVLGGETELDFVLPGILPIDWQRFYNSRDERRT 344
            Y V      A    +G  NPV   TG K++    E+DF LPG++PI+W RFY S D    
Sbjct: 217  YVVEPVARKAIGGLVG--NPVDLTTGRKLI--PDEIDFSLPGLMPIEWSRFYAS-DLTVD 271

Query: 345  GMFGAGWSVPYEISVEILLHPDGGEELLYTDEQGRRINLGGISLGSAMFSPGEGLSIRRH 404
             + G GW +P+E S+        G  +  TD QGR +    +  G  +++P E + +   
Sbjct: 272  SVLGRGWVLPWEQSLR-----RQGAFIYLTDNQGREVPFVTLQPGQRIYNPHEQVYLVCT 326

Query: 405  RNGQLLIESADGIYRLFESTPANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDNLDL- 463
              G  ++++ D ++  F   P   + + L ++ +   H +H      G L  +       
Sbjct: 327  EGGHYILQTLDNLFFYFGEVPDTNTEVPLQRIENVLGHFLHFTRTPDGTLTDISATGGTR 386

Query: 464  VQVELIRDQGHVSKIERVYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAGRRM 523
            V +      G ++ I+RV  ++  E L  Y Y+  G L+ V +  G   R FSY  G  M
Sbjct: 387  VHLHYDNPLGRLTDIKRVVNNEAVETLTQYRYDEHGQLSAVINRNGDTVRSFSYADGL-M 445

Query: 524  VEHQLPAGLRCFYEWALVEDVEWRVSHHWTDEGDAYHFEYDLSAGVTRITDGMQRISIRH 583
            V H    GL C Y W  + D   RV  HWT +G+ YHF YDL +  +  TD + R     
Sbjct: 446  VTHSNALGLGCHYRWQTLGDKP-RVVEHWTSDGEHYHFRYDLDSRTSWATDVLGRELEVQ 504

Query: 584  WNNQHQITKYSDNLGQTWLFDWNDERQLLGATDPQGGRFEYSYDETGNLISEIDPLGRRD 643
            +N  H++    D  G+ +  + ++   ++G T P G R ++ YDE   L+ E DPLGR+ 
Sbjct: 505  YNADHRVVASRDYGGERYAIELDEHGNMVGLTLPDGNRLQFKYDEFSRLLEETDPLGRKT 564

Query: 644  STMWLEHWALPLVETNPANHSWHYQYDQRGNCIAATDPMGHITRYRYDSHGHPVEIIDAT 703
               +     L    + P   +W  ++D +GN +A  D +G +T Y     G P  IIDAT
Sbjct: 565  QYEYHHLTTLVTQVSYPDGSTWRARFDDKGNLLAEFDALGQMTEYLNSDDGLPHTIIDAT 624

Query: 704  GKSKKLRWSPFGQLVEHIDCSGYSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQ 763
             KSK L W+   Q+  + DCSG ST + YDER  L  +TDAL + T  +    G ++   
Sbjct: 625  YKSKYLWWNTLAQVERYQDCSGKSTYYRYDERQHLVAVTDALNQTTTLARKPDGEVLRIS 684

Query: 764  LPDGRTEQYTRDTSGLLLGYTDPAGHTTLYQHNRRGQVCQRTDAYGRRVKFAYDSYGRLK 823
             PDG TE +T +  G +L +TD  G TT      RG    R DA G+RV++ YD   RL 
Sbjct: 685  HPDGTTESFTYNVYGQVLSHTDGKGQTTRLMRTARGLPSSRQDAKGQRVRYEYDKAMRLT 744

Query: 824  ALINENEESYQFVWDAGDRLTEQRDLDGSAKRYTYDLLNHMTAMTAVPAHFDNTLVNAAE 883
            AL+NEN  +Y F +DA DRL+E+  +D   +R++YD+  H+T +  +  + +N     AE
Sbjct: 745  ALVNENNATYSFAYDASDRLSEEVRVDNLTRRFSYDVGGHLTRLDEI-GYGEN-----AE 798

Query: 884  TPSPIVHRM-ERDAVGRLIAKMTDDGRTEYVYDSLDQLCAV------TFTDLSGDTQVLS 936
             P    H + ERDA+GRLIAK+  D +  + YD  D+L ++          L    + L 
Sbjct: 799  RPER--HTLFERDAIGRLIAKLNSDAQQRFTYDDGDRLLSIERQPTGIGKQLGITEEKLE 856

Query: 937  FAYAPLGRLLTEQSPMGTLQHHYDELGNLTQTQLPDGRWLNRLYYGSGHLHQINLDGEVI 996
            +AY  LGRL  E SP GTL + YD L NLT   LPDGR +N LYYGSGHLHQ+NLDG+VI
Sbjct: 857  YAYDLLGRLTKEISPDGTLGYEYDPLSNLTTLTLPDGRKVNHLYYGSGHLHQLNLDGQVI 916

Query: 997  SDFERDRLHREVLRTQGQLSTRSEYDRSGR--------LRSRHCRHSHQPMLTPAAMQQH 1048
            SD ERD LHREV RTQG+L++   YD  GR        L +      H   +  + + +H
Sbjct: 917  SDMERDDLHREVYRTQGKLTSCFGYDAMGRKAWQFASTLPADKLSQVHNTGINTSLLVEH 976

Query: 1049 --------FEYDPADNLTGKLDQQPTTQQRQLLHYDATGRITASQDNLLGQRETFTYDAA 1100
                    ++YDPA  L   LD+    +      Y+A G++ +     L   E F YD A
Sbjct: 977  AYNPIHRRYQYDPAGELVRTLDK---LRGEIKYEYEANGQLRSRDTGSLIGSEEFRYDPA 1033

Query: 1101 ANLLDSPHPGAGLVVHNKLMTYQDKRYRYDGFGRMIEKRSTSRGVQRFAYDAESRLIEVR 1160
            AN LD        V  N++  ++D+ YRYD +G +IEKRS    +Q F+YD E+RL+   
Sbjct: 1034 ANRLDFNARQFDKVKDNRIKQWRDQEYRYDPWGNLIEKRSGHSKLQHFSYDCENRLVRAE 1093

Query: 1161 N-ENGNVV---KMHYDPLGRRIKKTEHGIDGYPLSETRFSWDGLRLLQEHKYSQTSLYVY 1216
               NG +    +  YD LGRRI K +  I+G  + + RF W GLR+L+E    Q+ LY+Y
Sbjct: 1094 TLVNGKLESQGEYRYDSLGRRIAK-QAEING-EVEQKRFLWQGLRMLREETPGQSILYLY 1151

Query: 1217 ENEGYEPLARVDGI-GQLQKLRYYHNDLNGLPAQLSEADGHIVWQATYRVWGNTLEEVRE 1275
            E   Y PLARVD + G+ QK+ Y+H D  G P +L++++G IVWQATYR WG T+E +  
Sbjct: 1152 EPGSYAPLARVDQVEGEGQKVYYFHTDQIGTPLELTDSEGEIVWQATYRSWG-TIETLSI 1210

Query: 1276 PHYIEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPISLMGGLNLYLYGFNPFS 1335
                 +QNLRFQGQY D ETGLHYNTFR+Y  ++GR+ + DPI L GGLNLY YG NP  
Sbjct: 1211 KEV--DQNLRFQGQYFDAETGLHYNTFRYYYSEVGRYVTQDPIGLDGGLNLYRYGQNPAG 1268

Query: 1336 WVDPLGLE 1343
            W+DP G E
Sbjct: 1269 WIDPWGWE 1276