Pairwise Alignments

Query, 314 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

 Score =  449 bits (1156), Expect = e-131
 Identities = 225/320 (70%), Positives = 263/320 (82%), Gaps = 9/320 (2%)

Query: 1   MDFKDYYKILGVEPTADDKEIKAAYRKLARKYHPDVSKEKDAEAKFKDASEAYEALKSAD 60
           MDFKDYYKILGVEPTAD+K IKAAYRKLARKYHPDVSKE+DAE KFK+A+EAYE L  A 
Sbjct: 1   MDFKDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQ 60

Query: 61  KRAEYDELRKYG-QHGQPFQGPPGWQSRGGFGGGGGGGGEDFSDFFSSIFGSR---GDAF 116
           KRAE+DE+RKYG QHG+PFQ PPGW+SRGG   GGG  G DFSDFFSSIFG R   G+ F
Sbjct: 61  KRAEFDEIRKYGGQHGRPFQAPPGWESRGG---GGGFEGGDFSDFFSSIFGGRSAGGNPF 117

Query: 117 GGG--QRRPAGRKGQDVEMQLSVFLEETLSTESKQISFQVPQYDASGRHVSNTTKSLNVK 174
           GG   Q+R AGR+GQDVE++L+VFLEETLS ESKQISFQVPQ +A G+    TTK+LNV+
Sbjct: 118 GGARQQQRSAGRRGQDVELELAVFLEETLSKESKQISFQVPQTNAMGQRTGFTTKTLNVR 177

Query: 175 IPAGVVNGERIRLKGQGAPGVGGGANGDLYLIVKFAPHPKFEVDGENLIINLPLAPWELA 234
           IPAGV +GERIRLKGQGAPG GGGANGDL+L ++ APHP F+V+G +LII +PLAPWE A
Sbjct: 178 IPAGVTDGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLIITVPLAPWEAA 237

Query: 235 LGAEVAVPTLTGKINLKVPAGSQNGQRMRAKGHGLLNKAGQRGFLYVQLKAVMPPAGNDE 294
           LGA+VAVPTL GKINL +   SQ+GQR+R  G GL NK G+RG LY QLK VMPPA ++ 
Sbjct: 238 LGAKVAVPTLDGKINLTIRPDSQSGQRLRVPGKGLANKQGERGNLYAQLKVVMPPASDES 297

Query: 295 VKALWQELAQKAAFNPREQF 314
            + LW +L++KAAFNPR Q+
Sbjct: 298 ARELWTKLSEKAAFNPRTQW 317