Pairwise Alignments

Query, 314 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 375 a.a., Chaperone protein DnaJ from Pseudomonas putida KT2440

 Score =  185 bits (470), Expect = 1e-51
 Identities = 125/365 (34%), Positives = 180/365 (49%), Gaps = 81/365 (22%)

Query: 1   MDFKDYYKILGVEPTADDKEIKAAYRKLARKYHPDVSK-EKDAEAKFKDASEAYEALKSA 59
           M  +DYY++LGVE  A + ++K AYR+LA KYHPD +  +K++E KFK+A+EAYE L  A
Sbjct: 1   MSKRDYYEVLGVERGATEADLKKAYRRLAMKYHPDRNPGDKESEDKFKEANEAYEVLSDA 60

Query: 60  DKRAEYDELRKYGQHG-QPFQGPPGWQSRGGFGGGGGGGGEDFSDFFSSIFGSRGDAFGG 118
            KRA +D+   YG  G  P  G          GGG G GG +FSD F  +F    D FGG
Sbjct: 61  SKRAAFDQ---YGHAGVDPSMG----------GGGAGFGGANFSDIFGDVF---SDFFGG 104

Query: 119 GQR---RPAGRKGQDVEMQLSVFLEETLSTESKQISFQVPQY------DASGRHVSNTT- 168
           G R   R   ++G D+   L + LEE  +     +S +VP        D SG    +T  
Sbjct: 105 GGRGGGRGGAQRGSDLRYTLELNLEE--AVRGTTVSIRVPTLVNCQPCDGSGAKKGSTPS 162

Query: 169 --------------------------------------------------KSLNVKIPAG 178
                                                             K+L+VK+PAG
Sbjct: 163 TCPTCGGIGQVRMQQGFFSVQQTCPRCHGQGKIITDPCTSCHGEGRVEEYKTLSVKVPAG 222

Query: 179 VVNGERIRLKGQGAPGVGGGANGDLYLIVKFAPHPKFEVDGENLIINLPLAPWELALGAE 238
           V  G+RIRL G+G  G  GG  GDLY+++    H  F+ DG++L   +P++  + ALG E
Sbjct: 223 VDTGDRIRLSGEGEAGTHGGPTGDLYVVISVREHEIFQRDGKHLYCEVPISYTDAALGGE 282

Query: 239 VAVPTLTGKINLKVPAGSQNGQRMRAKGHGLLN-KAGQRGFLYVQLKAVMPPAGNDEVKA 297
           + VPTL G++ LK+P G+Q G++ R +G G+   + G  G L  ++    P   +   + 
Sbjct: 283 LEVPTLDGRVKLKIPEGTQTGKQFRLRGKGVAPVRGGGAGDLLCRVAVETPVNLSRRQRE 342

Query: 298 LWQEL 302
           L +EL
Sbjct: 343 LLEEL 347