Pairwise Alignments

Query, 444 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 447 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  177 bits (448), Expect = 8e-49
 Identities = 129/452 (28%), Positives = 210/452 (46%), Gaps = 17/452 (3%)

Query: 1   MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSAGSWGFSELLIDQGLLAQGKL 60
           MS  +RV+WSEGMF+  QHFQ  D + ++ +   +   +   WG   L +D+  LA G L
Sbjct: 1   MSKQSRVMWSEGMFLLPQHFQYQDEFHQHQLAEATLRSTPFHWGVQALQVDEDALANGSL 60

Query: 61  AIVSARGLLPDGTPFNIPQDDLAPSPLNIDDNLR--DGLVYLALPLKRAGARDTVDEGEA 118
            +   + + PDG+ ++ PQ D  P+  ++ D L+  D  VY AL L      + V++G  
Sbjct: 61  QLKRLKLVFPDGSLYDAPQHDPLPAARDLKDLLKANDLKVYAALKLPEPFGLNYVEDGHE 120

Query: 119 LEAARYVSQVREVRDDNAPFENRAPVAVGARALR----LLTAQDGISDYAAIGLVRIKEK 174
            +AAR   +    + D  P  N   +     +LR    LL   D +  Y+   L ++  +
Sbjct: 121 HKAARRFRK----QFDTLPDLNEGELENEITSLRLNVVLLVDGDSLDGYSHCPLAKL-TR 175

Query: 175 RADRALVLDDTYIPPVLDVAASKPLTAFRSELLGLLHQRGEALAG----RVVASGAGGAS 230
            +     LD  ++ P L + + + +      LLG L  + +AL+G    R       G+S
Sbjct: 176 NSMGGFNLDPHFVHPTLHLGSHETIAGIGKRLLGALQAKSKALSGRRRERADQIAEFGSS 235

Query: 231 EIADFMLLQLVNRAQPLIQHLSQLSPLHPERFFSELVSLAGEFSTFSTSGRRPQEYPQYQ 290
           ++  F LL  VNRA P + HL     LHPER +  L  LAG   TF T   +  + P+Y 
Sbjct: 236 DVTLFWLLNTVNRAHPQLAHLLAHPRLHPERLYLFLADLAGGLLTF-TLDTQLSDIPEYD 294

Query: 291 HDDLALSFAPVMAALREALSMLIDSKATPIPIVEKAYGVHVAMLADKTLLDSASFILVVR 350
           H D A S   +   +R  L  ++ ++   I + +         L D  L + A F + V 
Sbjct: 295 HHDPAASLVKLDEMIRVMLDNVVPNQCIVINLTQTKPSHWQGQLHDPRLAE-ADFYIAVH 353

Query: 351 ADVPGETLRARFGQQSKVGSVEHIRDLVNLQLPGITLLPLPVAPRQLPYHAGSTYYELDR 410
           AD+PG +L     +  KVGS E I  +VN  +PG+TL      P  +P    + Y+ ++ 
Sbjct: 354 ADMPGASLLELVPRAFKVGSPEDIEVVVNSAMPGVTLNHAARLPNAIPVRLDNQYFAIEP 413

Query: 411 GSEAWQQLGNSGGFAFHIAGQFPGLNLAFWAI 442
               ++++ ++    F+    F  L L   A+
Sbjct: 414 HGTVYERMISAQAICFYAPSAFTNLKLELMAV 445