Pairwise Alignments

Query, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

Subject, 1219 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

 Score =  764 bits (1973), Expect = 0.0
 Identities = 468/1226 (38%), Positives = 675/1226 (55%), Gaps = 74/1226 (6%)

Query: 1    MKAFFSFMIR---WVIPVLGLIALSLIIWFVGPLLDV-----LVPEGRRWALIILVFAVW 52
            ++A F F+I    WV   LGL+AL+ +IW +GP + V     L  E  R A+I L+FA+W
Sbjct: 2    LRAIFRFLIGRDLWVF--LGLVALAFLIWIIGPAIAVGRYRPLEDEIVRIAVIALMFAIW 59

Query: 53   IAYRVFRIIQARRQAAEVMRSLAAETPADPNSVATAE---ELTTLRQRMDEALALLKKAK 109
            +A  V+R  + RR  A+++  L   TP+     A  E   E+  L+    +A A+LK  +
Sbjct: 60   LARLVYRKWRERRLNAQLLNQL--RTPSKKEKEAKPEDAPEIKELQSGFTDATAILKNMR 117

Query: 110  LGGD------------ERRNLYELPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVR 157
             G              +R+ LY+LPWY+ IG PGSGKTTALVNS L FPLA QLG  AVR
Sbjct: 118  FGQGADGKPASRFSVFDRQYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVR 177

Query: 158  GVGGTRNCDWWFTDQAVLLDTAGRYTTQDSNSTVDKAAWLGFLDLLKKQRSRRPIDGAFI 217
            G+GGTRNCDWWFT++AVL+DTAGRYTT +SN   D+  W GFL+LLKK R R+PI+GA +
Sbjct: 178  GIGGTRNCDWWFTNEAVLIDTAGRYTTHESNRETDEGEWKGFLELLKKFRPRQPINGAIL 237

Query: 218  AISLSDLLLGTDAERAAHAAAIRLRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLS 277
             IS++DL L  DA+RA HA A+R R+ EL   LG+ FP+Y+++TK DL+ GF E+F +L 
Sbjct: 238  TISIADLPLADDAQRARHAMALRKRLLELRNDLGIDFPVYVLVTKTDLLAGFNEYFGSLG 297

Query: 278  KEERAQVWGMTF-----ALDDGKNTDSPL------AHLQSEFAGLEQRLNERLVERLQQE 326
            + ER QVWG TF     A +      +PL           E+  L QRL+ERL E L  E
Sbjct: 298  RAERQQVWGFTFPIEGNAANKAAKGAAPLKGGDLRERFHQEYRLLHQRLDERLPELLAAE 357

Query: 327  RDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNAFEERVLLRGVYFTSGTQEGSPIDRL 386
             DP RR   Y  PQQF + +D L +FL  VF P+ FE   +LRGVYFTSGTQEG+  DR+
Sbjct: 358  PDPMRRAQAYLLPQQFASFEDILGTFLADVFNPSKFEAASMLRGVYFTSGTQEGTAFDRV 417

Query: 387  IGAMAQSMNLDRQHLARQSGTGRSYFIEKLFTAVAFAERGLVGVNPKVERRRKWIARGVL 446
            +GA+ + + ++    A   G G+SYF+++L   V F + G+ G N +  RR++ I     
Sbjct: 418  MGAIKRYLQVNAPP-APPPGPGKSYFLKELLQQVIFRDAGVAGTNLRWYRRKRAIDIAGY 476

Query: 447  AATVALVVVVSSLWWVSYRANQAYIAQVD------QKVAPLGQTVQNLSPAQRDILAVLP 500
            +    L+V+       S+R N+ Y+A+VD       K A  G+ +  +  +  DI + L 
Sbjct: 477  SVIGVLLVLFLGACVNSWRNNKDYVAEVDGNAKAFNKAAARGE-LPTVVDSGGDIASSLL 535

Query: 501  LLNAVKNLAGDS------PSWSEGLGLYQGDMLEAESASVYRKLLIAVFAPRLVTRIEEQ 554
            +L+ +++L   S      P  S   GLYQG+ L+A +  VY++ L  V  P+   R+E+ 
Sbjct: 536  ILDRLRDLPKSSHFDVSDPPLSYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQS 595

Query: 555  LHGGGNSD--FLYEGLKAYLMLADSEHYDPDFIKAWIALDWDRNLPRDLPADQRQALAGH 612
            L     +D  + YE LKAYLML D+E YD DF++AW+  D DR +   L  +QR  L  H
Sbjct: 596  LREASKNDAEYSYEALKAYLMLFDAERYDADFLQAWLLSDVDRKIGASLTREQRTNLESH 655

Query: 613  LQSLFERHPPTARL--DPRLIDDLRRQLQQLPVAQRVYDRVKRQKLPEGIPD-FRLNEAA 669
            L++LF     T+    D RLI   R +L  +P+AQR Y R++R  L    P+ F + EA 
Sbjct: 656  LKALFAGRVLTSPFAKDERLITQTRERLAGVPLAQRSYARLRRILLQTSPPNAFSIAEAG 715

Query: 670  GRDAALVFSRKSGKPLGEPLSGFFTAKGYRQAFLLSSLNQTGTL-AEEQWVLGHEQADQQ 728
            G ++ALV  R SGKPL + +   FT +GY   F       T +L  E++WVL        
Sbjct: 716  GAESALVIRRASGKPLTDGIPTLFTYRGYWDIFDKRMAETTLSLEQEDRWVLQIRAPGIA 775

Query: 729  NVVS---LAADVRRLYFQDYQRQWDALLADIDFVPITSVAQAADVLRVISGPTSPLKKLL 785
            ++ S   L  +VRRLY  DY R WD  L DI      S+ Q+  + RV+S   SP+ +++
Sbjct: 776  DITSRELLLREVRRLYLTDYIRVWDEYLTDIRLADSRSLLQSIQMTRVLSTSESPMSRII 835

Query: 786  VAVAKETDLQAEERQLAAKGV--PVEGGVDKLKERLGSLLGQEQPAANAPAAADDP---V 840
               A+ETDL     + AA+G+    +  V   +ER+  L+GQ   +    A  D P   V
Sbjct: 836  RGAARETDLLRNHDE-AARGLLDQAQNRVASTRERIEQLIGQPDGSQRRNARVDRPESLV 894

Query: 841  TAHFAELNSIV-SKNEGEPAAIDGLLTDMNALYVQVSAMVGASGDALLGEAKNQAAAAAT 899
              HF  L  +V +  +G  A ID     +N LY      + A+  AL       ++ A T
Sbjct: 895  DNHFEPLRRMVTAPKQGGQAPIDATAALINELY----TFLTATDTALRSGNIPPSSDAVT 950

Query: 900  RVSLNAERQPPLVQGMVKSVVNSTTNSMMGGVRNQLNAAWVSEVVNVYRQSLAGRYPMSP 959
            +V   A R P   QGM+  +  + ++      R  +  +  + + +   Q++AGRYP S 
Sbjct: 951  KVQAEAGRLPVPFQGMLNDLSATASSKAAAVTRQNIGQSAAASIGSFCNQAIAGRYPFSR 1010

Query: 960  GSARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSAQTWRWQPGAAQKLGIAPGVLQTF 1019
            GS RD    DF Q F  GG+MD++F+K L   VDTS   W ++ G           L +F
Sbjct: 1011 GSNRDVASGDFAQLFAPGGMMDDFFQKNLITQVDTSVNPWAFKRGVDGSAAGRSAYLDSF 1070

Query: 1020 QRAATIRDAFF--RAGGTQPIVRFELKPVSMDPTITQFLLDLDGQQLSYDHGPSRPVAMQ 1077
            Q+A  IRD FF   AGG  P    +++P  MD  +TQF LD+DGQ + Y HGP  P  ++
Sbjct: 1071 QKAQAIRDVFFSGMAGGRTPSFTLDIRPEDMDAALTQFTLDIDGQTVRYAHGPQAPSTVK 1130

Query: 1078 WPNPGSIGVVRISIMPPSASGRSGVTLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDGA 1137
            WP P +   VR+ +   + +   G+  +GPWA  RL +++ +++G+SP+ FN    + G 
Sbjct: 1131 WPGPRNSNQVRLQVTTANGTPAGGIVTEGPWALHRLFDKASISSGSSPESFNATFDLQGK 1190

Query: 1138 SIAYELRANSAFNPFKSRVLSGFSLP 1163
             +   + ANS +NP +   ++ FS P
Sbjct: 1191 KVVLAVTANSVYNPLRLPQMNSFSCP 1216