Pairwise Alignments

Query, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

Subject, 1361 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

 Score = 85.5 bits (210), Expect = 3e-20
 Identities = 84/379 (22%), Positives = 148/379 (39%), Gaps = 30/379 (7%)

Query: 115 RRNLYELPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAV 174
           R + Y +PW +++      +   +  SG+   L+ +  + A      T+   W F D+ V
Sbjct: 69  RADRYGIPWIMLLNEGDDHRQLPIEQSGVASALSTESASAAA-----TQGISWHFFDRGV 123

Query: 175 LLDTAGRYTTQDSNSTVDKAAWLGFLDLLKKQRSRRPIDGAFIAISLSDLL-LGTDA--E 231
           ++D  G Y     +    +  W  FL + +  R +RP D   I I  + LL   TD   E
Sbjct: 124 VIDIQGAYLGSPDDDDASEKPWDEFLGMCRAYRPQRPFDSVVITIPAALLLDESTDGRLE 183

Query: 232 RAAHAAAIRLRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMTFAL 291
            +  A     R+     +  +RF +Y+++T  + + GF  F   L +  RA + G +   
Sbjct: 184 LSKRAKLAHRRLWLAQNRFAMRFAVYVLITGAEQLEGFSAFARALPEPLRASMLGWSSPY 243

Query: 292 DDGKNTDSPLAHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDCLQS 351
           D   +T      +      + + +++   E    +  P         P +  AL+  LQ 
Sbjct: 244 D--LSTTYQPGWVDEAVGTVVRSVSDVSAELFATDTSPQGAGPQLLLPSRIEALRGQLQL 301

Query: 352 FLEGVFKPNAFEERVLLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQHLARQSG----- 406
           +++ + +P+A+ E    RG+Y T    E +     I A   +    R+ L    G     
Sbjct: 302 YVDELMRPSAYHEPFFFRGIYLTGDAGESAQAVAAIDAEHDAYG--RKDLEPIGGDLIAQ 359

Query: 407 -TGRSYFIEKLFTAVAFAERGLVG-------VNPKVERRRKWIARGVLAA-TVALVVVVS 457
              +  F+  LF    F E GL           P + R  +W A   L    + LVV   
Sbjct: 360 LMRQPAFLRDLFEKKIFLEYGLTRPSRTQTLARPVLHRALRWTAVIFLGGWGIGLVVAT- 418

Query: 458 SLWWVSYRANQAYIAQVDQ 476
              W  +R N   ++ + Q
Sbjct: 419 ---WQLHRHNSTLVSALSQ 434