Pairwise Alignments

Query, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

Subject, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  370 bits (950), Expect = e-106
 Identities = 328/1230 (26%), Positives = 534/1230 (43%), Gaps = 104/1230 (8%)

Query: 1    MKAFFSFMIRWVIPV-------------LGLIALSLIIWFVGPLLD------VLVPEGRR 41
            M   + ++ RW  P+             LG + + + IW++GP         +     R 
Sbjct: 1    MNQLWKYLKRWGWPLMTRIGLAMPLLLGLGAVLMLVAIWWLGPQWTWRDQQPLASVAHRS 60

Query: 42   WALIILVFAVWIAYRVFRIIQARRQAAEVMRSLAAET-PADPNSVATAEELTT-LRQRMD 99
             A ++ V    +++ V    + RR  AE  +++AAE  P  P   A  + L+  L + +D
Sbjct: 61   MASLVFVLVALLSWLVVLRTRFRRLQAERQQAMAAEVDPTQPFVHAQEKALSQGLARYLD 120

Query: 100  EALALLKKAKLGGDERRNLYELPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGV 159
             A         GG  RR LY LPWY+++G   +GK++ +  +   F L  ++     RG 
Sbjct: 121  NA---------GG--RRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLT-RIDKAQARGR 168

Query: 160  GGTRNC---DWWFTDQAVLLDTAGRYTTQD-------SNSTVDKAA---------WLGFL 200
                      WW ++ AV++D  G + +Q+       S+ST  +++         W   L
Sbjct: 169  PAQALAYPVGWWISNDAVIIDPPGAFISQNGPADSLGSDSTDVESSVPSGTQAKLWQHLL 228

Query: 201  DLLKKQRSRRPIDGAFIAISLSDLLLGTDAERAAHAAAIRLRIQELYTQLGVRFPIYLML 260
            D L++ RS+R ++G  + + L  LL GT  +R A A  +R R+ E+ +QLG R P+Y++L
Sbjct: 229  DWLQRNRSQRALNGLVLVVDLPALLHGTVEQRTALAHLLRTRLYEVSSQLGSRLPLYVVL 288

Query: 261  TKLDLVPGFMEFFDNLSKEERAQVWGMTFALDDGKNTDSPLAHLQSEFAGLEQRLNERLV 320
            +K DL+ GF +F+  LS  +R  ++G TF LD     D+ L      +  L ++L E+++
Sbjct: 289  SKFDLLDGFDQFYSKLSAAKRNSLFGFTFKLDAVDTFDAWLGEYGEHYDRLLEQLFEQVI 348

Query: 321  ERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNAFEERVLLRGVYFTSGTQEG 380
            +RL  +  PA R  +Y   +Q   L+  L SFL      + F    L+RGVY++S  Q G
Sbjct: 349  DRLDVQGSPALRSRLYSLHRQLLGLRPMLLSFLRETLASDRFTTPALVRGVYWSSVVQHG 408

Query: 381  SPIDRLIGAMAQSMNLDRQHL-ARQSGTGRSYFIEKLFTAVAFAERGLVGVNPKVERRRK 439
               +  +   AQ        L  +      +YFI++ F  V + E GL G N +V RR++
Sbjct: 409  DVRNAFVREAAQPYKTSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRVARRKR 468

Query: 440  ---WIAR--GVLAATVALVVVVSSLWWVSYRANQAYIAQVDQKVAPLG--QTVQNLSPAQ 492
               W+    GVLA  VA+     + W   +  N    A V  K       +  Q L P  
Sbjct: 469  QLLWVGSSVGVLAFCVAI-----ASWHRYFDINGVKAASVLAKSREYSHHEVDQRLDPTG 523

Query: 493  RDILAVLPLLNAVKNLAGD-SPSWS--EGLGLYQGDMLEAESASVYRKLLIAVFAPRLVT 549
            R++L  L  +     + GD   +W     LGLYQG  +       Y  LL   F P L +
Sbjct: 524  RNLLEPLDQIRDAVAVFGDYRAAWPGVADLGLYQGRTIGPTVDEAYLSLLSRRFLPALAS 583

Query: 550  RIEEQLHGG-GNSDFLYEGLKAYLMLADSEHYDPDFIKAWIALDWDRNLPRDLPADQRQA 608
             + E +      S+     L+ Y ML D  +   ++++ W+A  W +  P       ++ 
Sbjct: 584  GVIEAMDAAPPGSEQQMAALRVYRMLEDRRNRRAEWVEDWMARQWQQAFPGQ--GQLQRD 641

Query: 609  LAGHLQSLFERHPPTARLDPRLIDDLRRQLQQLPVAQRVYDRVKRQKLPEGIPDFRLNEA 668
            L  HL+              + +  +++ L+++P+ QRVY  +K+Q   +      L   
Sbjct: 642  LMRHLKYALTYADTDLPQYRQRVSHVQQTLRKVPLPQRVYAGLKQQAQEQLHTGLDLRHQ 701

Query: 669  AGRDAALVFSRKSGKPLGEP---LSGFFTAKGYRQAFLLSSLNQTGTLAEEQWVLG---- 721
             G    +V+   SG   G+    L+   TAKG+++ F   S   T     +QW LG    
Sbjct: 702  VGPAFDVVYQLSSGSSQGDNGVLLAPMLTAKGFKEYFEPRSQRFTEMAMIDQWALGERAQ 761

Query: 722  --HEQADQQNVVSLAADVRRLYFQDYQRQWDALLADIDFVPITSVAQAADVLRVISGPTS 779
              +  ADQ    +L   +R LY  DY   W   L          +     +L  ++GP +
Sbjct: 762  LDYSDADQ---AALNERLRNLYSADYIDSWRRALNAFSVADFRDLDHGVTILEQLAGPAA 818

Query: 780  PLKKLLVAVAKETDLQAEERQLAAKGVPVEGGVDKLKERLGSLLGQEQPA---ANAPAAA 836
            PL +LL  V   + L +      A   P    ++   E+  +L+ Q   A   A   AA 
Sbjct: 819  PLHRLLETVRDNSSLLSPVNVGVADEAPSPVSINSKPEQQQALVIQRAFAGLSAMLHAAG 878

Query: 837  DDPVTAHFAELNSIVSKNEGEPAAIDGLLTDMNALYVQVSAMVGASGDALLGEAKNQAAA 896
            + P  +++ E ++ +        A+ G      A    V      +G   +G  +  A  
Sbjct: 879  EKP--SYYDETHAAIVAVHDYAKAVQGSPDRGKAALHAVHQRFSMTGHDPIGTLQRVATG 936

Query: 897  AATRVSLNAERQPPLVQGMVKSVVNSTTNSMMGGVRNQLNAAWVSEVVNVYRQSLAGRYP 956
                        P  +   V+ V + T   +      +L   W +EV + ++Q LA RYP
Sbjct: 937  L-----------PEPINHHVRKVAHQTAQVLNVEALRELERRWDAEVYSFFQQRLAERYP 985

Query: 957  MSPGSARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSAQTWRWQPGAAQKLGIAPGVL 1016
                 A DA+L+DF  FFG  G +  +  +YL+ ++  + +    Q G   +  I   V+
Sbjct: 986  FVV-RAPDASLEDFEAFFGPNGRLQQFQDQYLKLFLKDNLEA--LQNGLQGRSLIRTDVI 1042

Query: 1017 QTFQRAATIRDAFFRAGGTQPIVRFELKPVSMDPTITQFLLDLDGQQLSYDHGPSRPVAM 1076
            +  +RA  IR+ FF   G    V+F ++P+ +       LLDLDGQ +SY HGPS+   +
Sbjct: 1043 EQLERADRIRETFFDQRGNLS-VQFSIEPLGLSANQRTSLLDLDGQLISYTHGPSQITGI 1101

Query: 1077 QWPNPGSIGVVRISIMPPSASGRSGVTLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDG 1136
             WPN     V     +       S +   GPW+ FRLL +  L  G +    +L  +   
Sbjct: 1102 VWPNTLGQHVRSNLTLLRQNGNSSSLEYRGPWSMFRLLSRGALN-GRTATSVDLSFKTGD 1160

Query: 1137 ASIAYELRANSAFNPFKSRVLSGFSLPERL 1166
              + Y L A  AFNP   +   GF LP  L
Sbjct: 1161 GVMRYRLNAEKAFNPITQQPFKGFRLPRGL 1190