Pairwise Alignments

Query, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

Subject, 831 a.a., OmpA domain protein from Pseudomonas putida KT2440

 Score =  231 bits (588), Expect = 2e-64
 Identities = 151/411 (36%), Positives = 225/411 (54%), Gaps = 36/411 (8%)

Query: 86  ATAEELTTLRQRMDEALALLKKAKLGGDERRN-LYELPWYVIIGPPGSGKTTALVNSGLH 144
           A  EE++ LR+R+ + +  L   K  G   ++ LY LPWY++IG P +GK+T ++ SGL+
Sbjct: 88  ADREEVSLLRERLLQGIERLHSNKPRGTSNKDALYALPWYLVIGQPAAGKSTMILQSGLN 147

Query: 145 FPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAGRYTTQDSNSTVDKAAWLGFLDLLK 204
           FP A + G   V G+GGTRNCDW+F+ +AVLLDTAGRY     NS  +   W GFL LL+
Sbjct: 148 FPYAEREGV-RVAGLGGTRNCDWFFSSEAVLLDTAGRYM----NSPEEAGKWRGFLQLLR 202

Query: 205 KQRSRRPIDGAFIAISLSDLLLGTDAERAAHAAAIRLRIQELYTQLGVRFPIYLMLTKLD 264
           + R RRP++G  +++S++D+L G+  ++   A  +R RIQE    L VR PIYL+ TK D
Sbjct: 203 QHRQRRPLNGLIVSVSIADILHGSVEDQERVAKRLRERIQESCALLEVRLPIYLVFTKCD 262

Query: 265 LVPGFMEFFDNLSKEERAQVWGMTFA------LDDGKNTDSPLAHLQSEFAGLEQRLNER 318
           L+PGF  F+  L    R +V G TF+       D G+   + +  L   +    Q  +++
Sbjct: 263 LIPGFTAFYRQLDDAARGEVMGKTFSHKGYEQADWGQRFSNAMDELTRYWG---QMASQQ 319

Query: 319 LVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNAFEERVLLRGVYFTSGTQ 378
           LV+  Q  +   R D  Y FP +  ALK  L  F++ + + N ++   +LRG YFT+  Q
Sbjct: 320 LVQ--QDIQVTRRNDAAYRFPLELAALKPRLHQFVDSLLRANPYQNAEMLRGFYFTAALQ 377

Query: 379 EGSPIDRLIGAMAQSMNLDRQHLARQSGTGRS------YFIEKLFTAVAFAERGLVGV-- 430
                +   G   Q +  +R  L    GTG +       FI  LF  V   ++ LV +  
Sbjct: 378 AD---EAQWGCHGQHV-AERFALEHAEGTGTAGSQPAPLFINSLFRKVIIPDQHLVALYT 433

Query: 431 NPKVERRRK--WIARGVLAATVALVVVVSSLWWVSYRANQAYIAQVDQKVA 479
           +   ERRRK  W+    LAA     +V+ SLW  SY  N+A +A +  ++A
Sbjct: 434 SNHRERRRKAGWVGAAGLAA-----LVLCSLWGWSYLNNRATLASIADELA 479