Pairwise Alignments

Query, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

Subject, 1206 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  355 bits (910), Expect = e-101
 Identities = 328/1208 (27%), Positives = 518/1208 (42%), Gaps = 105/1208 (8%)

Query: 16   LGLIALSLIIWFVGP---------LLDVLVPEGRRWALIILVFAVWIAYRVFRIIQARRQ 66
            LG + + + IW++GP         L  V         L+++    W+     R    RR 
Sbjct: 29   LGALLMLVAIWWLGPQWTWREQQPLASVAHRSVASLVLVLVPLLCWLGVLRTRF---RRL 85

Query: 67   AAEVMRSLAAETPADPNSVATAEELTT--LRQRMDEALALLKKAKLGGDERRNLYELPWY 124
             AE  ++LAAE       V   E   +  L + +D A         GG  RR LY LPWY
Sbjct: 86   QAERRQALAAEQDVALPFVQAQERALSQGLERYLDNA---------GG--RRALYRLPWY 134

Query: 125  VIIGPPGSGKTTALVNSGLHFPLAA--QLGAGAVRGVGGTRNCDWWFTDQAVLLDTAGRY 182
            +++G   SGK++ +  +   F L    Q  A   +         WW +D AV++D  G +
Sbjct: 135  LVLGDEQSGKSSFIDRTDQRFTLTRIDQAQARGRQTQAMAYPVGWWVSDDAVIIDPPGVF 194

Query: 183  TTQD------SNSTVDKAA--------WLGFLDLLKKQRSRRPIDGAFIAISLSDLLLGT 228
             +Q       +N+  + +A        W   L  L+++RS+R ++G  + + L  LL G 
Sbjct: 195  ISQKPPVGSAANAPSEASAPPGIQARLWEHLLGWLQRKRSQRALNGVLLVVDLPALLHGR 254

Query: 229  DAERAAHAAAIRLRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMT 288
              +R A A  +R R+ E+ +QLG R P+Y++LTK DL+ GF +F+  L   +R  + G T
Sbjct: 255  PEQRVALAHGLRTRLYEVSSQLGARLPLYVVLTKFDLLDGFDQFYSQLPAAKRKSLLGFT 314

Query: 289  FALDDGKNTDSPLAHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDC 348
            F LD     D+ L      +  L  +L E++++RL      A    ++    Q   L+  
Sbjct: 315  FKLDAVDAFDAWLDEYDEHYGRLLTQLQEQVIDRLDVLGKTAPCGRLFSLHAQLIGLRPI 374

Query: 349  LQSFLEGVFKPNAFEERVLLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQ-HLARQSGT 407
            LQ+FL      + F    L+RGVY++S  Q+G   +  +   AQ           +  G 
Sbjct: 375  LQAFLRETLASDRFTTPPLVRGVYWSSVVQQGDMRNAFVREAAQPYTTKLPLREGKAQGK 434

Query: 408  GRSYFIEKLFTAVAFAERGLVGVNPKVERRRK---WIARGVLAATVALVVVVSSLWWVSY 464
               YFI++ F  V + E GL G N +V R ++   W+  GV    +A  + V+S  W  Y
Sbjct: 435  ALVYFIQQAFRRVIYQEAGLAGDNVRVARSKRHLLWVGSGV--GILAFSIAVAS--WQRY 490

Query: 465  R-ANQAYIAQVDQKVAPLG--QTVQNLSPAQRDILAVLPLLNAVKNLAGD-SPSWS--EG 518
               N A  A V  K       +    L P  R++LA L  +     + GD   +W     
Sbjct: 491  ADINGAKAASVLAKSQEYSGHEVDMRLDPTGRNLLAPLDQIRDAVAVFGDYRAAWPVVAD 550

Query: 519  LGLYQGDMLEAESASVYRKLLIAVFAPRLVTRIEEQLHGG-GNSDFLYEGLKAYLMLADS 577
             GLYQG  +       Y  LL   F P L + + + ++     S+     L+ Y M+ D 
Sbjct: 551  FGLYQGRNIGPLVDEAYLSLLSKRFLPALASGVIDAMNAAPPGSEQQMAALRVYRMIEDR 610

Query: 578  EHYDPDFIKAWIALDWDRNLP------RDLPADQRQALAGHLQSLFERHPPTARLDPRLI 631
                P++++ W+A  W R  P      RDL    + ALA       +   P  R   + +
Sbjct: 611  NSRRPEWVEDWMARQWQRAFPGQGQLQRDLMQHLKYALA-----YADTDLPQYR---QRV 662

Query: 632  DDLRRQLQQLPVAQRVYDRVKRQKLPEGIPDFRLNEAAGRDAALVFSRKSGKPLGEP--- 688
             ++++ L++LP+ QRVY  +K+Q   +      L    G    +V+   SG   G+    
Sbjct: 663  SEVQQALRKLPLPQRVYAGLKQQSYQQLHAGLDLRHQVGPAFDVVYQPSSGARQGDEDVR 722

Query: 689  LSGFFTAKGYRQAFLLSSLNQTGTLAEEQWVLG-HEQADQQNV--VSLAADVRRLYFQDY 745
            L+   TAKG+R+ F   S         +QW LG   Q D  +V   +L   +  LY  DY
Sbjct: 723  LAAMLTAKGFREYFEPHSQRFAEMAMVDQWALGERSQLDYSDVDRDALTERLYNLYSADY 782

Query: 746  QRQWDALLADIDFVPITSVAQAADVLRVISGPTSPLKKLLVAVAKETDLQAEERQLAAKG 805
               W   L          +     +L  ++GP +PL++LL  V   T L           
Sbjct: 783  IDSWRRALTAFTVADFRDLDHGVAILEQLTGPAAPLQRLLDTVRDNTSL------APPAA 836

Query: 806  VPVEGGVDKLKERLGSLLGQEQPAANAPAAADDPVTAHFAELNSIVSKNEGEPAAIDGLL 865
            V   G +  L+   G     EQ  A A       +   FA L +++     +P+  D  L
Sbjct: 837  VEASGELSTLRVATGK---PEQQQALA-------IQRAFAGLGAMLQATGEKPSYYDETL 886

Query: 866  TDMNALYVQVSAMVGA--SGDALLGEAKNQAAAAATRVSLN-----AERQPPLVQGMVKS 918
              + A+     A+  +   G A L +A +Q  A   +  +      A   P  +   V+ 
Sbjct: 887  GAVAAVLDYAKAVQDSPDRGKAAL-QAVHQRFAMTGQDPIGTLQRIATGLPEPISHQVRK 945

Query: 919  VVNSTTNSMMGGVRNQLNAAWVSEVVNVYRQSLAGRYPMSPGSARDATLDDFGQFFGVGG 978
            + + T   +      +L   W ++V + ++Q LAGRYP     A DA+LDDF  FFG  G
Sbjct: 946  LADQTAQVLNVEALRELERRWDADVYSFFQQRLAGRYPFVV-KAPDASLDDFEAFFGPKG 1004

Query: 979  VMDNYFRKYLQPYVDTSAQTWRWQPGAAQKLGIAPGVLQTFQRAATIRDAFFRAGGTQPI 1038
             +  +  +YL+ ++  + +    Q     +  I   V++  + A  IR+ FF   G +  
Sbjct: 1005 RLQQFNDRYLKVFLKDNLEA--LQSAQHGQSLIRADVIEQLELAERIRETFFDQRG-KLS 1061

Query: 1039 VRFELKPVSMDPTITQFLLDLDGQQLSYDHGPSRPVAMQWPNPGSIGVVRISIMPPSASG 1098
            V+F ++P+ +       LLDLDGQ ++Y HGPS    + WPN     V     +      
Sbjct: 1062 VQFSIEPLGLSANQRTSLLDLDGQLIAYTHGPSHITGIVWPNTLGQQVRSNLTLLRQNGN 1121

Query: 1099 RSGVTLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASIAYELRANSAFNPFKSRVLS 1158
             S +   GPW+ FRLL +  L  G +    +L  R     + Y L A  AFNP   +   
Sbjct: 1122 SSSLEYRGPWSMFRLLSRGALN-GRTATSVDLSFRTGDGVMRYRLNAEKAFNPITQQPFK 1180

Query: 1159 GFSLPERL 1166
            GF LP  L
Sbjct: 1181 GFRLPRGL 1188