Pairwise Alignments

Query, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

Subject, 804 a.a., ATP-dependent DNA helicase PcrA from Xanthobacter sp. DMC5

 Score =  383 bits (983), Expect = e-110
 Identities = 237/650 (36%), Positives = 356/650 (54%), Gaps = 39/650 (6%)

Query: 1   MSRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKA 60
           +S LNP Q+EAV  + GPLLVLAGAG+GKT V+T ++AH++         I+ +TFTNKA
Sbjct: 30  LSGLNPEQREAVETLEGPLLVLAGAGTGKTRVLTARVAHILASGRAFPSQILVVTFTNKA 89

Query: 61  AREMKERVGTLLKGGEGRGLT-VCTFHNLGLNIIRKEHARLGYKPGFSIFDETDVKSLMT 119
           AREMK+R+  ++ G +  G+  + TFH++G+ I+R+ H  +G K GF+I D  D   L+ 
Sbjct: 90  AREMKDRIHGMV-GDQIEGMPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIRLLK 148

Query: 120 DIMQKEYAGDDGVDE-------IKNMIGAWKNDLILPAQALENA----RNPKEQTAAIVY 168
            ++  E      +DE       +   I  WKN  + P            N K     ++Y
Sbjct: 149 QLLAAE-----NIDEKRWPARLLAATIDGWKNRGLSPKDVPPGEGAVFANGK---GGMLY 200

Query: 169 THYQRTLKAFNAVDFDDLILLPVKLFEEHADILEKWQNKVRYLLVDEYQDTNASQYLLVK 228
             YQ  LKA NAVDF DL+L  ++LF E+ D+L ++  + +YLLVDEYQDTN +QYL ++
Sbjct: 201 AAYQARLKALNAVDFGDLLLEGIRLFRENPDVLAEYHRRFKYLLVDEYQDTNVAQYLWLR 260

Query: 229 MLIGKRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCAN 288
           +L         VGDDDQSIY WRGA  +N++  + D+P  KV+ LE+NYRST  IL  A 
Sbjct: 261 LLAQGSKNVCCVGDDDQSIYGWRGAEVDNILRFESDFPGAKVIRLERNYRSTGHILASAA 320

Query: 289 VLISNNPHEFEKQLWSEMGHGDEIRVIRCRNEDAEAERVAVEILSLHLRTDRPYSDFAIL 348
            LI++N     K L+SE   G+ + V    +   EA  V  EI +L  R     S+ AIL
Sbjct: 321 HLIAHNEGRLGKTLFSEGDEGERVSVTGAWDSGEEARAVGEEIEALQ-RAGHRLSEIAIL 379

Query: 349 YRGNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINV 408
            R ++Q +  E +     +PYR+ GG  F+ R E++D +AY R + +  DD AF R++NV
Sbjct: 380 VRASFQMREFEDRFVTLGMPYRVIGGPRFYERAEIRDALAYLRCVNSTADDLAFERIVNV 439

Query: 409 PRREIGSTTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDRLARFKRFMDKVREQCA 468
           P+R IG  T++++ + A    + +  A   +   E L  +    L    +  ++ REQ  
Sbjct: 440 PKRGIGDATVKQIHDVARAAGVPLQEAARVLTESEELKPKVRGTLRGLIQAFERWREQAR 499

Query: 469 GEDPISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFLIEALKNTLEKDEDGEMTVE 528
                     ++ +  Y    + + S++ A   R+ N+  L+ +            M   
Sbjct: 500 TMSHTEIAEIVLDESGYTEMWQKDRSAEAAG--RLENLKELVRS------------MEPF 545

Query: 529 DAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEAD 588
           +++   +    L    +   G + VQ+MTLH++KGLEF  VF+ G EE + PH+ +++  
Sbjct: 546 ESLPGFLEHISLVMDVDNGAGEDAVQVMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEQ 605

Query: 589 ---TIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 635
               +EEERRLAYVGITRAR +    FA+ R+ +G      PSRFLDELP
Sbjct: 606 GKAGLEEERRLAYVGITRARASARIWFASNRRIHGMWNSTVPSRFLDELP 655