Pairwise Alignments

Query, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score =  382 bits (980), Expect = e-110
 Identities = 236/656 (35%), Positives = 360/656 (54%), Gaps = 39/656 (5%)

Query: 4   LNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKAARE 63
           LN  Q+EAV    GP+LVLAGAG+GKT+ +T ++AHL+         I+A+TFTNKAARE
Sbjct: 17  LNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKAARE 76

Query: 64  MKERVGTLLKGGEGRGLT-VCTFHNLGLNIIRKEHARLGYKPGFSIFDETDVKSLMTDIM 122
           M+ERVG ++ G    G+  + TFH +   ++R+    +G +  F+I D  D   LM  ++
Sbjct: 77  MRERVGRMI-GPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQLI 135

Query: 123 QKEYAGDDGVDE-------IKNMIGAWKNDLILPAQA----LENARNPKEQTAAIVYTHY 171
           Q E     G+DE       +  +I  WKN  + P +      E   + K Q    +Y  Y
Sbjct: 136 QAE-----GIDEKRWPARQLAGLIDQWKNKGLTPEEVGAGEAEGYAHGKGQK---LYAAY 187

Query: 172 QRTLKAFNAVDFDDLILLPVKLFEEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLI 231
           Q  L+  NA DF DL+L  + + + H D+LE++Q + +Y++VDEYQDTN+SQYL +++L 
Sbjct: 188 QARLREVNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDEYQDTNSSQYLWLRLLA 247

Query: 232 GKRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLI 291
             R     VGDDDQSIY+WRGA   N++  + D+P   +V LEQNYRST  IL  A+ +I
Sbjct: 248 QTRKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGAVIVRLEQNYRSTPHILGAASGVI 307

Query: 292 SNNPHEFEKQLWSEMGHGDEIRVIRCRNEDAEAERVAVEILSLHLRTDRPYSDFAILYRG 351
           + N +   K LW+++  G+++RV+   +   EA RV  EI ++  R      + AIL R 
Sbjct: 308 AENGNRLGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAI-ARAGGSLDEVAILVRA 366

Query: 352 NYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRR 411
            +Q +  E +     +PYR+ GG  F+ R E++D +AY RL+  P DD AF R++NVP+R
Sbjct: 367 QHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKR 426

Query: 412 EIGSTTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDRLARFKRFMDKVREQCAGED 471
            +G   +EKL   A    I +  A   I   + L  +    L  F   + + R++ A   
Sbjct: 427 GLGDKAVEKLHRLARAEGIPLALAAARILDTDELTPQARRSLGAFIGDLARWRDRAAQLP 486

Query: 472 PISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFLIEALKNTLEKDEDGEMTVEDAI 531
                R ++ +  Y   L+   S++ A   R+ N+  L  A++              + +
Sbjct: 487 HAELARQILDESGYTATLQAERSTESAG--RLENLSELTRAMEE------------YETL 532

Query: 532 GKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIE---AD 588
           G  +    L    E +   + + +MT+HA+KGLEF  VF+ G EE I P + +++    +
Sbjct: 533 GAFLEHVSLVMDNEAQQDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQRALDEGGLN 592

Query: 589 TIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGN 644
           ++EEERRLAYV ITRAR+      AA R+ YG+     PSRF+ ELPP+ +  E +
Sbjct: 593 SLEEERRLAYVAITRARKRCTILHAANRRIYGQWTSSIPSRFVGELPPEHVDEESS 648