Pairwise Alignments

Query, 825 a.a., outer membrane usher protein from Pseudomonas simiae WCS417

Subject, 820 a.a., Outer membrane usher protein SfmD from Escherichia coli ECRC62

 Score =  119 bits (298), Expect = 7e-31
 Identities = 170/740 (22%), Positives = 293/740 (39%), Gaps = 107/740 (14%)

Query: 89  CFTPALLAKAGLVT---PSKVLREG---ITPDQACHDFVGEYPATMVRLRPSSDEVTLVV 142
           CF   LL + GL +   P    ++    I   +A  D    +    +RL  +  ++ L+ 
Sbjct: 103 CFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLS 162

Query: 143 PTQSLRAPEWEGGSFSEGGAAALFNYDVLGFDTHARSGSSRFVSAYTEAGFNLGNWIVRS 202
                  PE     + EG  A L NY+  G         S F S  +  G N+G W +R+
Sbjct: 163 SAHGYIPPE----EWDEGIPALLLNYNFTG--NRGNGNDSYFFSELS--GINIGPWRLRN 214

Query: 203 RQF--YVSDNG--KTRTEQVNAYAQRDIAALQSTFQVGQISTNNPIFGGVQLTGLQFF-- 256
                Y   NG    +   +  + QR I  L+S   +G  +T + IF GV   G++ +  
Sbjct: 215 NGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGIRLYSS 274

Query: 257 ----PDGQQRSGAGDSNVVVEGLAQSQSRVEVRQSGALIHSTLVPEGPFRLTGLPLLNST 312
               PD QQ          V G+A++ +++ +RQ+G +I+ + V  G F +T L   +S 
Sbjct: 275 DNMYPDSQQGFAP-----TVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329

Query: 313 SDLDVSVIDVRGAKRSFVVPAASFLGGAPV---EPGYYFSL--GKVRETTLDNQQSPVVA 367
            DLDV++ +  G ++++ +P ++     P+   E  + F L  G  R      Q SP   
Sbjct: 330 GDLDVTIDERDGNQQNYTIPYST----VPILQREGRFKFDLTAGDFRSGN-SQQSSPFFF 384

Query: 368 MGSGTWGLGQRSSLGFGLLSTDEYQSAGGSLSSVFFHQVTVGVRHNLSR--DAQDEVGGA 425
            G+   GL Q            E+ + GG+  S  +    +G+  NL        +V  A
Sbjct: 385 QGTALGGLPQ------------EFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432

Query: 426 RSTLSLGIP--------LFANLDINLSASAQSRGYR------EVLD--AGQASRGYDLD- 468
           RS L+            L+A        + Q  GYR        LD  A +   GY+ D 
Sbjct: 433 RSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492

Query: 469 -----------------ARFKR--QYTAGLSWADPSLGGFSLGFTRSSQFDGQSNDHLF- 508
                             RF R  +    +S +    G   +  T    ++   +D  + 
Sbjct: 493 DYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 552

Query: 509 ASWNNTFNGVGVALIADAQVDATAPRSLEPIRGGRRNDRLDEGTSVRLQVTVPLGTDRSM 568
             + +++ G+  +L          P + E I G   N  +      + + T     DR+ 
Sbjct: 553 VGYTSSWVGISYSLSFSWNESVGIPDN-ERIVG--LNVSVPFNVLTKRRYTRENALDRAY 609

Query: 569 STYVSRRGDR------LDAGTALSERVNDYVNYEVGVDRDMKEREQSVRGRVDVLPLYTR 622
           +++ + R            G  L E  N  ++Y V    D      +     +    Y  
Sbjct: 610 ASFNANRNSNGQNSWLAGVGGTLLEGHN--LSYHVS-QGDTSNNGYTGSATANWQAAYAT 666

Query: 623 VSLGVDRDPSNTHYSGQLQGGIVAHEHGVTFSPYAVQDTFGIVSVGDIGAAKVSTPQGPV 682
           + +G + D      + QL GG+V HE+G+T S   + DT  ++     G  ++    G +
Sbjct: 667 LGVGYNYDRDQHDVNWQLSGGVVGHENGITLS-QPLGDTNVLIKAPGAGGVRIENQTG-I 724

Query: 683 WTDFSGQAVIPGLQAYSNNHLQVQTQSLPKRVDLKNGTKVLAAGRGSVNILNFDV-VKVR 741
            TD+ G AV+P    Y  N + + T ++   +D++     +   +G++   NFD  + VR
Sbjct: 725 LTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVR 784

Query: 742 RLLLEAQDEEGRPLPQGAAV 761
            L+   Q   G+P+P G+ V
Sbjct: 785 ALITVTQG--GKPVPFGSLV 802