Pairwise Alignments

Query, 222 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 227 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  187 bits (476), Expect = 1e-52
 Identities = 101/204 (49%), Positives = 138/204 (67%)

Query: 3   YQFDFVPVLANTDLLLRGALFTLELTAIGAILGVALGTVGAVVRAWKIQPFAWCFGVYVE 62
           YQFDF PVLA   LLL GA  T++L+ +  +LG ALGTV A+ R  K        G YVE
Sbjct: 3   YQFDFAPVLAQWPLLLEGAWTTVQLSFLATVLGFALGTVCALGRNSKHGWLRGLTGGYVE 62

Query: 63  LIRNTPFLVQLFFIFFGLPSLGLKITEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQLE 122
            IRNTP L+Q +F+ FGL S G+ +     AVLA+V+N+GAYS EIIRAGI++I +GQLE
Sbjct: 63  AIRNTPLLIQSYFLIFGLSSAGVTMPIMVGAVLALVVNIGAYSCEIIRAGIESIHKGQLE 122

Query: 123 AAAALAMTRFEAFRHVVLLPALGKVWPALSSQIIIVMLGSAVCSQIATEELSFAANFIQS 182
           AA  L +++ + F HV+L PA+ +V+PAL+SQ +++ML S++ S I  EEL   AN IQS
Sbjct: 123 AAECLGLSKVQVFWHVILRPAVERVYPALASQFVLLMLASSIMSSIGAEELFGVANRIQS 182

Query: 183 RNFRAFETYALTTLVYLCMALMIR 206
             FR FE + +  +VYL ++  +R
Sbjct: 183 DTFRNFEIFIVLWVVYLALSYAMR 206