Pairwise Alignments

Query, 222 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  199 bits (507), Expect = 3e-56
 Identities = 97/222 (43%), Positives = 154/222 (69%), Gaps = 1/222 (0%)

Query: 1   MAYQFDFVPVLANTDLLLRGALFTLELTAIGAILGVALGTVGAVVRAWKIQPFAWCFGVY 60
           M Y  DF P+ +   + + GA  TL++TA+  ++GVA+GT+ A  +  KI+  +    +Y
Sbjct: 1   MKYSLDFAPLASYWPVFINGAWLTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIY 60

Query: 61  VELIRNTPFLVQLFFIFFGLPSLGLKITEWQAAVLAMVINLGAYSTEIIRAGIQAIPRGQ 120
           +E++RNTPFLVQ+F ++FGL S G+++  + AAVLAMVIN+ AY+ EIIRAG++++PRGQ
Sbjct: 61  IEIVRNTPFLVQIFLLYFGLASFGVRMPTFAAAVLAMVINIAAYAAEIIRAGLESVPRGQ 120

Query: 121 LEAAAALAMTRFEAFRHVVLLPALGKVWPALSSQIIIVMLGSAVCSQIATEELSFAANFI 180
           +EAA  L ++++    HV+L P++ KV+PAL+SQ +++M  SA+ SQI+ EEL+  AN +
Sbjct: 121 IEAAECLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180

Query: 181 QSRNFRAFETYALTTLVYLCMALMIRQLLNWIGRRFVMRNSR 222
           QS  FR+ ETY +   +YL ++L I+ L+ W    ++ R  R
Sbjct: 181 QSDTFRSLETYIVVAALYLVLSLFIK-LVTWALGEYLFRRRR 221