Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Pseudomonas simiae WCS417

Subject, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  484 bits (1247), Expect = e-141
 Identities = 245/381 (64%), Positives = 306/381 (80%), Gaps = 7/381 (1%)

Query: 40  KKHAKSGEEISG----DGVLEILQDGFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGD 95
           KK+A   +E  G    +GVLEI+ DG+GFLRS D +YLA PDDIYVSPSQI+ F L+TGD
Sbjct: 214 KKYASLVKEFDGIIENEGVLEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGD 273

Query: 96  TIVGKIRPPKEGERYFALLKVDTINFDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTE 155
            I G+IRPPKEGE+YFALLKV ++N    E  +++I FE LTPLFP  R+ +       +
Sbjct: 274 NIKGQIRPPKEGEKYFALLKVASVNGKTTEEIRDRIPFEYLTPLFPEERLNLTT---RAD 330

Query: 156 DLTGRVIDLCAPIGKGQRGLIVAPPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEE 215
           + + R++DL APIGKGQRG+IVA PK GKT++LQ IA  IA N+PE HL++LLIDERPEE
Sbjct: 331 NFSTRIVDLFAPIGKGQRGMIVAQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEE 390

Query: 216 VTEMQRTVRGEVVASTFDEPPTRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYN 275
           VT+M R+V+ EVV+STFDE   RHV+V+ MV+EKAKR+VE   DVVILLDSITRLARAYN
Sbjct: 391 VTDMARSVKAEVVSSTFDEQAERHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYN 450

Query: 276 TVIPSSGKVLTGGVDAHALEKPKRFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEF 335
           TV+PSSGK+L+GGVDA+AL KPKRFFGAARN+E GGSLTIIATALVETGSKMDEVI+EEF
Sbjct: 451 TVVPSSGKILSGGVDANALHKPKRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEF 510

Query: 336 KGTGNMELPLDRRIAEKRVFPAININRSGTRREELLTADDELQRMWILRKLLHPMDEVAA 395
           KGTGNMEL LDR+++ +R++PAI++  SGTRRE+LL   +E+QR+WILRKL+  M    A
Sbjct: 511 KGTGNMELSLDRKLSNRRIYPAIDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEA 570

Query: 396 IEFLIDKLKTTKTNDEFFLSM 416
           +EFL+ ++K T+ N EF +SM
Sbjct: 571 MEFLLQRMKGTRDNAEFLISM 591



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 16/47 (34%), Positives = 34/47 (72%)

Query: 2  NLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEE 48
          N+ ELK + +++L ++AEE+G++N    +K D+I+++L + A + E+
Sbjct: 3  NIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAITPEK 49