Pairwise Alignments

Query, 371 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 913 a.a., ABC-type multidrug transport system, permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  107 bits (268), Expect = 1e-27
 Identities = 96/358 (26%), Positives = 160/358 (44%), Gaps = 27/358 (7%)

Query: 4   FAHILRLGIKELTSLRHDGVLLLFLFYAFTVAIYMPAAGSVIGVHNASVAFVDEDHSSLS 63
           F  +     +E   LR D V          + + +   G  + V N   A +D D +  S
Sbjct: 542 FRRLFSYSRREALELRRDPVRSTLALLGTVILMLIMGYGISMDVENLRFAVLDRDQTVSS 601

Query: 64  RQMAEALQPPEF--QAPIPLAYDQLDKVMDSGEYTFVINVPANFQADLLAGRQPGVQVNV 121
           +  +  L    +  + P   +YD+LD+ M SGE    I +P NF  D+  G    + V V
Sbjct: 602 QAWSLNLAGSRYFIEQPPLASYDELDRRMRSGELAVAIEIPPNFGRDIARGTPAQIGVWV 661

Query: 122 DATAMSQAFMGAGYIGRIFQRELLTYSGQAAANQAP------ALLTTRALFNTNLEGGWF 175
           D    S+A    GY+  + Q  L     Q AA++ P       LL     +  N +    
Sbjct: 662 DGAMPSRAETVKGYVQAMHQSWL-----QEAASRQPNPVKQVGLLNIETRYRYNPDVKSL 716

Query: 176 LAVIQIVNNITILAI--ILTGTALLREREHGTLDHLLVLPLTALEIMLAK----IWSNML 229
            A++  V  + ++ I  +L+  +++RE+E G++ +L V P T  E +L K    I   ML
Sbjct: 717 PAIVPAVIPLLLMMIPSMLSALSVVREKELGSMINLYVTPTTRSEFLLGKQLPYIALGML 776

Query: 230 VVVLCTWLSLEVVVKGLLGVPLAGSLGLFLFVTALYLFASTALGIFLATLARS--TPQFG 287
             +L   LS+ V      GVPL GS         LY+  +T LG+ ++T  +S     FG
Sbjct: 777 NFLLLCALSVFV-----FGVPLKGSFLTLTLAALLYVIIATGLGLLISTFMKSQIAAIFG 831

Query: 288 LLAIPVIIPMLLLSGGSTPLDSMPEWLQWVMQGSPSTHFVSLSAAILFRDAGVSVVWP 345
             +I  +IP    SG   P+ S+    +W+ +  P++HF++++     +   +S +WP
Sbjct: 832 -TSIITLIPATQFSGMIDPVASLEGPGRWIGEIYPTSHFLTIARGTFSKALDLSDLWP 888