Pairwise Alignments

Query, 371 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 372 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  357 bits (917), Expect = e-103
 Identities = 184/366 (50%), Positives = 256/366 (69%), Gaps = 1/366 (0%)

Query: 5   AHILRLGIKELTSLRHDGVLLLFLFYAFTVAIYMPAAGSVIGVHNASVAFVDEDHSSLSR 64
           ++I +LGIKEL  L  DG+LLL + YAFT+ IY  ++     ++NA++A VDED S LS 
Sbjct: 6   SNIFQLGIKELRGLARDGMLLLLIVYAFTLQIYTGSSALPETLNNAAIAIVDEDQSPLSG 65

Query: 65  QMAEALQPPEFQAPIPLAYDQLDKVMDSGEYTFVINVPANFQADLLAGRQPGVQVNVDAT 124
           +++ A  PP F  P  ++  ++DK MD+G  TF +N+P +FQ  L+AG+QP +Q+N+DAT
Sbjct: 66  RISTAFYPPYFAPPKQISIAEMDKRMDAGLDTFALNIPPDFQRRLMAGQQPAIQLNIDAT 125

Query: 125 AMSQAFMGAGYIGRIFQRELLTYSGQ-AAANQAPALLTTRALFNTNLEGGWFLAVIQIVN 183
            MSQAF G GY+  I   E+  Y  +   A   P  LT R+ FN  L+  WF ++  I+ 
Sbjct: 126 RMSQAFSGGGYVQNIVTSEVQEYVNRYRGATTVPVDLTLRSRFNPELDKSWFGSINNIIT 185

Query: 184 NITILAIILTGTALLREREHGTLDHLLVLPLTALEIMLAKIWSNMLVVVLCTWLSLEVVV 243
            IT+L+I+LTG AL+REREHGT++HLLV+P+T LEIML+K+WS  LVV++ +  SL VVV
Sbjct: 186 AITMLSIVLTGAALIREREHGTVEHLLVMPVTPLEIMLSKVWSMGLVVLVASAFSLFVVV 245

Query: 244 KGLLGVPLAGSLGLFLFVTALYLFASTALGIFLATLARSTPQFGLLAIPVIIPMLLLSGG 303
           KGLL +P+ GSL LFL  TAL LFA T++GIFLAT+A S PQFG+L I  ++P+ +LSG 
Sbjct: 246 KGLLAIPIEGSLSLFLLGTALQLFAMTSMGIFLATVAGSMPQFGMLLILFLLPLQVLSGA 305

Query: 304 STPLDSMPEWLQWVMQGSPSTHFVSLSAAILFRDAGVSVVWPDVLALAGIGLLFFAVALA 363
            TP +SMP+ +Q++M  +P+THFV L+ ++LFR  G+ VVWP +LAL  IG   F  AL 
Sbjct: 306 MTPRESMPDIIQYIMLLAPNTHFVILAQSVLFRGGGLDVVWPQLLALLAIGSALFIFALR 365

Query: 364 RFRKSL 369
           RFR+ L
Sbjct: 366 RFRRFL 371