Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  284 bits (727), Expect = 3e-81
 Identities = 164/443 (37%), Positives = 241/443 (54%), Gaps = 47/443 (10%)

Query: 19  AGAAGFVEDSKATLGLRNFYINTDNRNG-----TGANKNEEWGQGFDLRFISGYTQGTVG 73
           A AAGF+ED+ A +  RN Y N D R+G      GA+K EEW QGF L   SGYTQG VG
Sbjct: 29  AQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGYTQGPVG 88

Query: 74  FGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSEHNG--KAVNDYSSLGLTAK 131
            GVDA+G+ G +LDS         P+ +N G     + PS  +   ++ + Y+ +GL AK
Sbjct: 89  VGVDALGMFGFKLDSS--------PADSNSG-----LLPSSGHDPRRSADQYAKMGLAAK 135

Query: 132 AKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIKDLTLVGGQIEKAKGRNS 191
            K+S T LK G++ P +P++  NDGRLLP  F G  +T+ ++ DL     +++K   R+S
Sbjct: 136 VKVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDS 195

Query: 192 SSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFLGLTHN 251
           +  +++ +   N R A   +++ F  AG DY+  +  +AQY    LE+ Y+QHFLGL  +
Sbjct: 196 TDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVAS 255

Query: 252 WAIGPGVLKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKGKVDNNLYSGLFLYTVAG 311
             +  G L +D+R   S D G                  A  G++D+  +SG+  Y++ G
Sbjct: 256 QPLPVGSLSADMRLIKSDDIG-----------------NARAGEIDHRAFSGMLGYSLGG 298

Query: 312 HTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGERTWQARYAYDFAKVGVP 371
           H    G+Q   G+S  P+L   DGS+ YL    Q+  FA A ER+WQ RY YDF  +GVP
Sbjct: 299 HKLSAGWQRMYGNSAMPYL---DGSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVP 355

Query: 372 GLTAGVVYLKGSDIDTVANTASRTQFNGQSEWERDITVAYVIPEGPLKNLGVAWKNAMWR 431
           GLT    Y+ G +I    ++          EWERD    Y +  G  K++ V  +N+ +R
Sbjct: 356 GLTFFTRYINGDNIKVPGSSVE------GKEWERDTEFKYQVQSGTFKDVSVRLRNSTYR 409

Query: 432 TDI-AGARDQDENRLIVSYSIPL 453
           ++    ARD DE R+IVSY+  +
Sbjct: 410 SNYERWARDMDETRVIVSYNFSI 432