Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 417 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  271 bits (693), Expect = 3e-77
 Identities = 175/456 (38%), Positives = 242/456 (53%), Gaps = 49/456 (10%)

Query: 1   MKKSTLALAVALG-AIAQQAGAAGFVEDSKATLGLRNFYINTDNRN-GTGANKNEEWGQG 58
           + +S LA+++A G  +   A   GF+ED+K  L LRN+Y N D R+ G    K EEW QG
Sbjct: 8   LARSVLAVSLAFGLGLPAWAQEGGFLEDAKGGLTLRNYYFNRDFRDPGAAKGKVEEWAQG 67

Query: 59  FDLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSEHNGK 118
           F  +F SGYT G +GFG+D I L GV+LDSGGGT+G+              + P   +G+
Sbjct: 68  FIFKFSSGYTPGLIGFGLDGIALFGVKLDSGGGTSGSE-------------LLPVHDDGR 114

Query: 119 AVNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIKDLTL 178
           A +DY   GL AK ++S TELK+G L P +P++  +DGRLLPQTF+G  + + +I+ L+L
Sbjct: 115 AADDYGRAGLAAKLRMSATELKVGELLPDIPLLRYDDGRLLPQTFRGAMLDSREIEGLSL 174

Query: 179 VGGQIEKAKGRNSSSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDLT-AQYYYGNL 237
             GQ  +   R+SS  ++LS   A   G T   S+ F YAG +Y+  +  T    ++  L
Sbjct: 175 QAGQYREVSLRHSSDMQDLSAWAA--PGVT---SDGFNYAGAEYRFNQQRTLIGAWHSQL 229

Query: 238 EDFYKQHFLGLTHNWAIGPGVLKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKGKVD 297
           ED Y+Q +  L H+  +G   L ++L YF   DDG                 +A  G + 
Sbjct: 230 EDIYQQSYFNLLHSQRVGEWTLGANLGYFIDRDDG-----------------QARIGDIQ 272

Query: 298 NNLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGERTW 357
           +     L   + +GHT   G Q  +G S   W++    S   L  DM    F+ A ER+W
Sbjct: 273 SRTGYALLSASHSGHTLYLGLQKVSGDSQ--WMSVYGSSGRTLGNDMFNGNFSNADERSW 330

Query: 358 QARYAYDFAKVGVPGLTAGVVYLKGSDIDTVANTASRTQFNGQSEWERDITVAYVIPEGP 417
           Q RY Y+FA +GVPGL A V Y  G +  T A +      NG+ EWERD  V Y    G 
Sbjct: 331 QVRYDYNFAALGVPGLLAMVRYGHGENATTAAGS------NGK-EWERDAEVNYTFQSGA 383

Query: 418 LKNLGVAWKNAMWRTDIAGARDQDENRLIVSYSIPL 453
           LKNL +   NA  R       D D+ RLIVSY + L
Sbjct: 384 LKNLNIRLNNATNRRSFNS--DLDQTRLIVSYPLTL 417