Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  229 bits (583), Expect = 2e-64
 Identities = 155/474 (32%), Positives = 229/474 (48%), Gaps = 58/474 (12%)

Query: 5   TLALAVALGAIAQQAGAA-----GFVEDSKATLGLRNFYINTDNRNGTGANKN------- 52
           TLA  +AL  +  Q  AA     GF+E S  ++  RNFY N DNR+      N       
Sbjct: 8   TLAACLALAGVGSQVVAAEKSADGFMEGSTLSVLNRNFYFNRDNRDSVAPTHNPSKQADN 67

Query: 53  ---EEWGQGFDLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGT 109
              E WG     RF SG+TQGTVG G+DA  +LG++LD+GGG NG         G     
Sbjct: 68  GYSEAWGHAVITRFESGFTQGTVGVGLDAFAMLGLKLDTGGGRNG---------GRSSFD 118

Query: 110 IFPSEHNGKAVNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQIT 169
           + P + +G+A ++Y+ +G  AK ++  T LK+G + P  PV+   D RLLP++F+G  + 
Sbjct: 119 VLPVDRDGQARDEYTKVGGAAKLRLFDTVLKVGDVFPANPVVAAGDSRLLPESFRGVTLE 178

Query: 170 TNDIKDLTLVGGQIE-KAKGRNSSSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDL 228
            + IKDLTL  G++   ++  +S   EN          + W       Y GGDY++ + +
Sbjct: 179 NSSIKDLTLQAGRLHAMSQPMSSDLRENFVTFYGGPVDSPW-----IAYGGGDYRLNEHV 233

Query: 229 TAQYYYGNLEDFYKQHFLGLTHNWAIGPGV-LKSDLRYFNSSDDGANGNESAYFTTGNYQ 287
           +   +   L+D + Q++ G + +W +   + L     Y+ + D+G               
Sbjct: 234 SVSLFSSRLKDAWNQYYAGTSLSWPLSEALALIGGFNYYKAVDEG--------------- 278

Query: 288 GFRAGKGKVDNNLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQ 347
             +   G  DN+++S         HT    +Q +NG  DF +L Q D  S +L   +Q  
Sbjct: 279 --QQRLGAFDNDIWSAKLGVRFGAHTLALTHQRNNGDDDFDYLRQSD--SIFLDNSIQYS 334

Query: 348 KFARAGERTWQARYAYDFAKVGVPGLTAGVVYLKGSDID-TVAN-TASRTQFNG-----Q 400
            F    ER+W  RY  + A  GVPGL+    Y KG+D D + AN T  R    G     Q
Sbjct: 335 DFNAPKERSWMLRYDLNMAAYGVPGLSFMTRYGKGNDADYSNANATYMRRDVAGNPLTDQ 394

Query: 401 SEWERDITVAYVIPEGPLKNLGVAWKNAMWRTDIAGARDQDENRLIVSYSIPLL 454
             WERDI V YV+  G  K+L +  + A  R   A   D DE R+IV Y + +L
Sbjct: 395 KRWERDIEVKYVVQTGAAKDLSLRVRQATTRA-TAFESDLDEVRMIVEYPLSIL 447