Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  216 bits (550), Expect = 1e-60
 Identities = 148/469 (31%), Positives = 228/469 (48%), Gaps = 47/469 (10%)

Query: 3   KSTLALAVALGAIA-QQAGAAGFVEDSKATLGLRNFYINTDNRNGT---GANKNE----- 53
           ++ L+LA+ L + A   +   GF++ ++  +  RNF+ + D RNG      N  E     
Sbjct: 8   RTALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLH 67

Query: 54  -EWGQGFDLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFP 112
            EWG G      SG+T+GTVGFGVD  GL+G++LD G   NGA       PG    +   
Sbjct: 68  REWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGG---NGAVGNGVGVPGIVSRS--G 122

Query: 113 SEHNGKAVNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTND 172
           S  +G+  + Y  +G   K +   TEL+ G + P  PV+  +D RLLPQT +G     N 
Sbjct: 123 SNFDGEPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNS 182

Query: 173 IKDLTLVGGQIEKAKGRNSSSNEN--LSLSGANSRGATWRDSNKFIYAGGDYKITKDLTA 230
           +  L+L GG++E +  RN+S++     ++     +GA     N  +Y GGDY+    LT 
Sbjct: 183 LDGLSLQGGKLESSSDRNASNHRGDLGTVYAGRIKGA-----NDVVYLGGDYRFNDQLTL 237

Query: 231 QYYYGNLEDFYKQHFLGLTHNWAIGPGV-LKSDLRYFNSSDDGANGNESAYFTTGNYQGF 289
           + +   L+D + Q F  + H   +G  + LK+ L Y+ + D G                 
Sbjct: 238 RLHSSRLDDVWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSG----------------- 280

Query: 290 RAGKGKVDNNLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKF 349
           +A  G++DN+ +S         H F   Y   +G + F ++   +     L    Q+  F
Sbjct: 281 QALAGQIDNDSWSVHAGLAAGAHGFKLSYTRIDGDTPFDYV--WNTYDLQLDAASQVSDF 338

Query: 350 ARAGERTWQARYAYDFAKVGVPGLTAGVVYLKGSDIDTVANTASRTQFNGQSE---WERD 406
               ER W+ARY YDFA +GVPGL+    Y++G+DID      + + FNG  +   WER+
Sbjct: 339 NNPNERAWEARYDYDFAPLGVPGLSLTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERN 398

Query: 407 ITVAYVIPEGPLKNLGVAWKNAMWRT--DIAGARDQDENRLIVSYSIPL 453
           + + YV+  GP K+L      A  R   D     + DE RLIV Y + +
Sbjct: 399 LWLKYVLQSGPAKDLSFNLMQATHRVGGDHVAESNVDELRLIVQYPLDI 447