Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 429 a.a., tricarboxylate-specific outer membrane porin from Pseudomonas putida KT2440

 Score =  354 bits (908), Expect = e-102
 Identities = 196/454 (43%), Positives = 268/454 (59%), Gaps = 45/454 (9%)

Query: 2   KKSTLALAVALGAIAQQAGAAGFVEDSKATLGLRNFYINTDNRNGTGA--NKNEEWGQGF 59
           + S +A A+AL  +A  + AA F EDS AT   RN Y N D R+GT A  +K +EW QGF
Sbjct: 18  RPSAIASALALAGVAPMSQAA-FFEDSTATFETRNMYFNRDFRDGTSAQQSKRDEWAQGF 76

Query: 60  DLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSEHNGKA 119
            L F SGYT GTVGFG+DA+G+LG++LDS             +P      + P+  +GKA
Sbjct: 77  ILNFESGYTDGTVGFGLDALGMLGIKLDS-------------SPDRTDSGLLPTHDDGKA 123

Query: 120 VNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIKDLTLV 179
            ++YS LGLT K KISQTELK+GTL P+LP +  NDGR+LPQTF+GG +T+ +IK LT  
Sbjct: 124 ADEYSKLGLTGKVKISQTELKIGTLIPELPTLQPNDGRILPQTFEGGLLTSKEIKGLTFT 183

Query: 180 GGQIEKAKGRNSSSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDLTAQYYYGNLED 239
           GG+I+KAK RN ++ E+L+L+  N R      ++     G DY+ T  +T  Y++  L+D
Sbjct: 184 GGRIDKAKDRNDTNWEDLALNNKNGRFGGTFSADNLALGGLDYQFTDRITGSYHFAQLDD 243

Query: 240 FYKQHFLGLTHNWAIGPGVLKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKGKVDNN 299
            Y+QHF+G+      GPG L +DLR   S D GA                 A  G +DN 
Sbjct: 244 IYRQHFIGMVATQPWGPGTLGADLRLAMSDDAGA-----------------AKAGNIDNT 286

Query: 300 LYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGERTWQA 359
             +G+  Y + GH     +Q  +G S FP++   DG+  YL   +QI  FA A ER+WQA
Sbjct: 287 TVNGMLSYALGGHKVSAAWQQLSGESAFPYV---DGADPYLVNFVQINDFAGADERSWQA 343

Query: 360 RYAYDFAKVGVPGLTAGVVYLKGSDIDTVANTASRTQFNGQSEWERDITVAYVIPEGPLK 419
           RY Y+FA +GVPGLT    Y+ G ++   A    +       EWER+  + YV+  GPLK
Sbjct: 344 RYDYNFAALGVPGLTFMTRYISGDNVSRAAGGEGK-------EWERNTELKYVVQSGPLK 396

Query: 420 NLGVAWKNAMWRTDIAGARDQDENRLIVSYSIPL 453
           N+ V  +NA +R++   ARD DE RL+VSYS+ L
Sbjct: 397 NVAVRLRNATFRSNF--ARDADEVRLLVSYSVAL 428