Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  227 bits (579), Expect = 5e-64
 Identities = 157/466 (33%), Positives = 215/466 (46%), Gaps = 58/466 (12%)

Query: 6   LALAVALGAIAQQAGAAGFVEDSKATLGLRNFYINTDNRNGTGANKNEEWGQGFDLRFIS 65
           L   +   A A +  A GF+E S   L  RN Y N DN N  G     EWGQG   RF S
Sbjct: 14  LTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHNA-GVRDTREWGQGAVARFES 72

Query: 66  GYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSEH------NGKA 119
           GYT G VGFG+DA  +LG++LD GGG              + GT    EH       G A
Sbjct: 73  GYTPGVVGFGLDAHAMLGLKLDGGGG--------------HAGTSILPEHIKDDGELGAA 118

Query: 120 VNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIKDLTLV 179
            + +S+ G   K K   TELK G L    PVI   + R+LPQTF+G  +T   I  L L 
Sbjct: 119 PHSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLE 178

Query: 180 GGQIEKAKGRNSSSNENLSLSGANSRGATWRDSNKFI-YAGGDYKITKDLTAQYYYGNLE 238
           GGQ+      N S +  +     +       D +K + +AG  +  T+ +TA  Y   L+
Sbjct: 179 GGQVSFTHPYNQSGHRRIDTYYGS---LDEHDKSKHLNWAGASWSGTEHITANLYAAELK 235

Query: 239 DFYKQHFLGLTHNWAIGPGV-LKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKGKVD 297
           D + Q++    + + +   V L   + ++++ D G                 +A  GK+D
Sbjct: 236 DIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTG-----------------QALLGKID 278

Query: 298 NNLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGERTW 357
           NN YS  F      H+    YQ  NG++ F ++N GD  S YL        F    ER+W
Sbjct: 279 NNTYSVHFTVNAGFHSVTAAYQRVNGNTPFDYINLGD--SVYLDNSRMYSDFNAPNERSW 336

Query: 358 QARYAYDFAKVGVPGLTAGVVYLKGSDIDTVANTASRTQFNGQSE-------WERDITVA 410
           + +Y YDFA VGVPGL+  + Y +G + D    T   T ++   E       WERD+ V 
Sbjct: 337 KLQYGYDFAGVGVPGLSTSLSYSRG-EADLTKATQDTTHYDYYREDGKNAMHWERDLDVK 395

Query: 411 YVIPEGPLKNLGVAWKNAMWR-----TDIAGARDQDENRLIVSYSI 451
           YV  EG LK+L V  + A  R       I    D DE R+IV Y +
Sbjct: 396 YVFQEGDLKDLSVLVRYATHRGSQGYASIDSNSDNDELRVIVDYPL 441