Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  228 bits (581), Expect = 3e-64
 Identities = 149/470 (31%), Positives = 225/470 (47%), Gaps = 54/470 (11%)

Query: 4   STLALAVALGAIAQQAGAAGFVEDSKATLGLRNFYINTDNRNGTGANKN----------E 53
           S L+ + A+ A A+     GF+E S  T+  RNFY N DNR+ T    N          E
Sbjct: 13  SALSGSYAISAQAEDK-PEGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSGKGNTNGYSE 71

Query: 54  EWGQGFDLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPS 113
            W      +F SG+TQGTVGFGVDA  ++G++LD+G G NG         G     + P 
Sbjct: 72  AWAHAIISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNG---------GRSSFDVLPV 122

Query: 114 EHNGKAVNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDI 173
           ++ G+A ++Y+ +G  AK ++  T +K+G + P  PV+ + D RLLP++F+G  +    I
Sbjct: 123 DNKGEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENTSI 182

Query: 174 KDLTLVGGQIE-KAKGRNSSSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDLTAQY 232
           + LTL GG++   ++  +S+ N+N          + W       Y GGDY I  + T   
Sbjct: 183 QGLTLQGGRLHAMSQPVSSNLNDNFVTFYGGPVNSPW-----IGYGGGDYSINDNWTVSV 237

Query: 233 YYGNLEDFYKQHFLGLTHNWAIGPGV-LKSDLRYFNSSDDGANGNESAYFTTGNYQGFRA 291
           Y   L+D + Q++ G +  + +   + L     Y+ + D+G                 + 
Sbjct: 238 YASQLKDVWNQYYAGTSVVYPLSDDLALIGGFNYYKAVDEG-----------------KK 280

Query: 292 GKGKVDNNLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFAR 351
             G+ DNN++S         HT    +Q +NG  DF +L Q D  S ++   +Q   F  
Sbjct: 281 RLGEFDNNIWSAKVGVRYGAHTLALSHQRNNGDDDFDYLRQSD--SIFVDNSIQYSDFNS 338

Query: 352 AGERTWQARYAYDFAKVGVPGLTAGVVYLKGS--DIDTVANTASRTQFNG-----QSEWE 404
             ER+W  RY  +F   G+PGLT    Y +GS  D         RT  NG     Q  WE
Sbjct: 339 PKERSWMLRYDLNFTSYGIPGLTFMTRYARGSGADYSNANQFYMRTDDNGNPLDNQKRWE 398

Query: 405 RDITVAYVIPEGPLKNLGVAWKNAMWRTDIAGARDQDENRLIVSYSIPLL 454
           RD+ V YV+  GP K+L    + A  R   A   D DE R+I+ Y + +L
Sbjct: 399 RDVEVKYVVQTGPAKDLSFRLRQATTRA-TAFESDLDETRVIIEYPLSIL 447