Pairwise Alignments

Query, 364 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score =  398 bits (1023), Expect = e-115
 Identities = 195/358 (54%), Positives = 265/358 (74%), Gaps = 5/358 (1%)

Query: 9   AMLVGAGITLTLSVQAAPTV-HIYNWSDYIGTDTLANFEKASGIKPVYDVFDSNETLEGK 67
           A L+GA   +  +VQA   V ++YNWSDYI  DT+A FEK +GIK  YDVFDSNETLE K
Sbjct: 11  AALMGA---MASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETLEAK 67

Query: 68  LLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLTNYANLDPALLKRL-EKNDPGNQYA 126
           LLAG++GYD+VVPSN+FL KQIKAG +++LD+S L N+ NLDP LLK + + +D  N++A
Sbjct: 68  LLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKDNKHA 127

Query: 127 VPYLWGTNGIGYNGDKGKEVLGVDHIDSWAVLFEPENMKKLATCGVSFMDSADEMLPAVL 186
            PY+WG+ GIGYN +K K  LGVD IDSW V+F+PEN+ KL +CGVSF+D+  EMLPA L
Sbjct: 128 FPYMWGSIGIGYNPEKVKAALGVDKIDSWDVVFKPENIAKLKSCGVSFLDAPTEMLPAAL 187

Query: 187 NYMGLNPNSTNPDDYKKAEEKLLKVRPYVTYFHSSKYISDLANGNICVAAGFSGDVFQAK 246
           +Y+G   +ST  +D K AE+  LK+RP +TYFHSSKYI D+ANGNICVA G+SGD+ Q+K
Sbjct: 188 HYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSGDLEQSK 247

Query: 247 ARAAEAGKGVNIAYTIPKEGGNLWFDVLAIPKDATNVKEAHAFINYLLQPEVIAQVSDYV 306
           ARA EAG  V + Y IPKEG   ++D++AIPKDA +   A+ F+N+L+QPE++A++++ V
Sbjct: 248 ARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAEITNAV 307

Query: 307 GYANPNPGADKLMEQSIRTDEAVYPPQAVLDRTFVNFELPPKVQRLMTRSWTKVKTGK 364
            + N N  A   +++ I +D ++YPP  V  + +        VQR++TRSWTK+K+GK
Sbjct: 308 RFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKIKSGK 365