Pairwise Alignments

Query, 304 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 286 a.a., conserved protein (RefSeq) from Escherichia coli BW25113

 Score =  139 bits (349), Expect = 1e-37
 Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 11/252 (4%)

Query: 55  DYRVALEAQVIEGLDDDVSALTYDPVRKSLFTVTNKNAELIELSLEGKILRRIPLVGFGD 114
           +Y   ++ + I G+ +++S+LT+     +LF+  NK A ++E++  G  +R IPL    D
Sbjct: 43  NYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKD 102

Query: 115 AEAVEFISDNIYVISDERQQRL--IKVHVNDDTQFLDAADAEQMTLGVHVGGNKGFEGLA 172
            E +E+I DN +VISDER   +  I +  N + + L                N GFEGLA
Sbjct: 103 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQDSPT----NCGFEGLA 158

Query: 173 YDSVGKRLFVAKERDPMLIYEVHGFPHFKPEKTYSVHVINNPKRDAGLFVRDLSSLQYDE 232
           Y       +  KE++P+ +Y+V+G        +  +H+  +        + D+S  ++++
Sbjct: 159 YSRQDHTFWFFKEKNPIEVYKVNGLL-----SSNELHISKDEALQRQFTLDDVSGAEFNQ 213

Query: 233 RSGHLLALSDESFLVLELDIDGRPLSSLSLLNGRHGLKKRVPQAEGIAMDDEGALYLVSE 292
           +   LL LS ES  + E+ + G  +  +SL  G  GL   + QAEG+AMD  G +Y+VSE
Sbjct: 214 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE 273

Query: 293 PNLFYVFKKPSS 304
           PN FY F   SS
Sbjct: 274 PNRFYRFTPQSS 285