Pairwise Alignments

Query, 260 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 273 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  139 bits (351), Expect = 5e-38
 Identities = 87/252 (34%), Positives = 132/252 (52%), Gaps = 1/252 (0%)

Query: 10  GACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDPQVLTHLAVGTSLATIIFTSVNAVREH 69
           G  AG+LAGLFG+GGG ++VPV    F L      V  HL++GTSLA I+ TSV +   H
Sbjct: 18  GVVAGLLAGLFGIGGGAVLVPVFYHVFGLLDVPEAVRMHLSLGTSLAIIVPTSVRSFLTH 77

Query: 70  HRRGAVRWPIFVWMTVGILIGAGFGALTAEAISGPHLQKIIGVFALLVAVQLALD-VKPK 128
            ++GAV   +     V + +G    ++ A   S   L+ I    AL +A ++ ++    +
Sbjct: 78  RQKGAVDIDLLKGWIVAVPLGTILASVVAAYASSVALRLIFAFIALALAFRMIVNRASWQ 137

Query: 129 ASRTVPGKLGLTVAGTFIGWASAIFGIGGGSLTVPFLTWRSVPMQQAVATSSACGLPIAL 188
               +P      + GT IG  S + G+GGG +   F+T     + QAVATSS  G+ I+L
Sbjct: 138 LGSDLPKNPARFLVGTGIGLLSGLMGVGGGVMNNTFMTLYGRTIHQAVATSSGVGVLISL 197

Query: 189 ASALSFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARFGARLAHRLSPRLLKRLFA 248
              L ++  GW +  LP  S GF+   A++ +   +++ A +G RLAH LS + L+R F 
Sbjct: 198 PGLLGYIWAGWGNAGLPPFSTGFINWIAVVLLIPITLLVAPYGVRLAHALSKKQLERAFG 257

Query: 249 GLLFCVGINFLF 260
             L  V   F +
Sbjct: 258 VFLVFVAAQFFY 269



 Score = 33.1 bits (74), Expect = 6e-06
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 127 PKASRTVPGKLGLTVAGTFIGWASAIFGIGGGSLTVPFL--------TWRSVPMQQAVAT 178
           P  S  +     L  AG   G  + +FGIGGG++ VP             +V M  ++ T
Sbjct: 2   PPVSEILVFAAALAAAGVVAGLLAGLFGIGGGAVLVPVFYHVFGLLDVPEAVRMHLSLGT 61

Query: 179 SSACGLPIALASALSF---------MILGWHDPLLPAHSLGFVYLPALLGIALTSMVFAR 229
           S A  +P ++ S L+          ++ GW   +     L  V       +AL  ++FA 
Sbjct: 62  SLAIIVPTSVRSFLTHRQKGAVDIDLLKGWIVAVPLGTILASVVAAYASSVAL-RLIFAF 120

Query: 230 FGARLAHRL 238
               LA R+
Sbjct: 121 IALALAFRM 129