Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 116 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

 Score =  129 bits (325), Expect = 2e-35
 Identities = 64/100 (64%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 12  VPGA--NLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSY 69
           VP A  +L+AY+  V+ IP+LT E E+ LA     E+DL AAR+++ +HLRFVVH+AR Y
Sbjct: 17  VPSALGSLDAYIGAVHQIPVLTVEDEQALARRFRDEEDLDAARELIHSHLRFVVHVARGY 76

Query: 70  SGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHW 109
           +GYGL   DLIQEGN+GLMKAVKRF+PE GVRLVSFAVHW
Sbjct: 77  NGYGLQIGDLIQEGNIGLMKAVKRFDPEQGVRLVSFAVHW 116