Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

 Score = 93.6 bits (231), Expect = 6e-24
 Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 32/284 (11%)

Query: 17  LEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYGLAQ 76
           L  Y+  V    L TP +E + A +     D  A + M+  +LR VV IA+ Y G G+  
Sbjct: 70  LTIYLRQVRRTELFTPAEEYQAACAAR-AGDFAARQSMIEHNLRLVVSIAKGYLGRGVPM 128

Query: 77  ADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKL 136
           +DLI+EGN+GLM A+ +F PE G R  ++A  WI+  +   ++   R +++      R+L
Sbjct: 129 SDLIEEGNLGLMHAITKFEPERGFRFSTYATWWIRQSVERAVMTQARAIRL-PVHVVREL 187

Query: 137 FFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVR-EMESRLTGHDMAFDPAAEADDDSAF 195
              LR+++          +   AE L   P  VR E  + L G D+     A AD  +  
Sbjct: 188 QQVLRARR---------TLEGDAEFLAHRPDGVRVEDIAALLGRDV----QAVADLLALA 234

Query: 196 QSPANY-LEDHRYDPARQLEDADWSDNSNHN-------------LHEALEVLDDRSRDIL 241
           ++P +    D R D    L D   SD+   +             L + +  LD R R++L
Sbjct: 235 EAPRSLDAGDARGDDGFTLADTVASDDEQSSPSGATHAHEVERLLDQWVHALDAREREVL 294

Query: 242 YQRW--LAEEKATLHDLAQKYNVSAERIRQLEKSAMNKLKLSIA 283
             R+     E  TL  L+ +  ++ ER+RQ++  A+ K++  +A
Sbjct: 295 EGRYGLHDREPETLEVLSVRLGLTRERVRQIQNEALAKMRRQLA 338