Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

 Score =  516 bits (1330), Expect = e-151
 Identities = 259/284 (91%), Positives = 272/284 (95%)

Query: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLR 60
           MTTSLQPAYALVPGANLEAYVHTVNSIPLLT EQER+L E LYYEQD+ AARQMV+AHLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLR 60

Query: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120
           FVVHIARSY+GYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR
Sbjct: 61  FVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHD 180
           NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNN+EVHRVAESLGVEPREVREMESRL+G D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLSGQD 180

Query: 181 MAFDPAAEADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDI 240
           MAFDPAAEADDDSAFQSPA+YLEDHRYDPA QLEDADWSDNS  NLHEAL+ LD+RSRDI
Sbjct: 181 MAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDI 240

Query: 241 LYQRWLAEEKATLHDLAQKYNVSAERIRQLEKSAMNKLKLSIAA 284
           LYQRWLAEEKATLH+LA KY+VSAERIRQLEK+AMNK+K  IAA
Sbjct: 241 LYQRWLAEEKATLHELADKYSVSAERIRQLEKNAMNKVKALIAA 284