Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  114 bits (285), Expect = 3e-30
 Identities = 77/268 (28%), Positives = 141/268 (52%), Gaps = 18/268 (6%)

Query: 18  EAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYGLAQA 77
           + Y++ +   PLL+PE+E   A  L  + D    ++M+ ++LR VV IAR Y   GL+  
Sbjct: 65  QLYLNEIGFSPLLSPEEEVHFAR-LSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLL 123

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   I+   R +++      ++L 
Sbjct: 124 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHVVKELN 182

Query: 138 FNLRSQKKRLAWLNN----EEVHRVAESLGVEPREVREMESRLTGHDMAFDPAAEADDDS 193
             LR+ ++    L++    EE+  + E    E + +  +  R++  D++  P    D D 
Sbjct: 183 VYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGP----DSDK 238

Query: 194 AFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRW--LAEEKA 251
                    +D   DP   L+D D S + +  L E    L D+ R+++ +R+     E +
Sbjct: 239 TLLD--TLTDDRPTDPCELLQDDDLSQSIDQWLGE----LTDKQREVVVRRFGLRGHESS 292

Query: 252 TLHDLAQKYNVSAERIRQLEKSAMNKLK 279
           TL D+  +  ++ ER+RQ++   + +L+
Sbjct: 293 TLEDVGLEIGLTRERVRQIQVEGLKRLR 320