Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 315 a.a., RNA polymerase sigma factor RpoH from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  278 bits (712), Expect = 8e-80
 Identities = 153/293 (52%), Positives = 200/293 (68%), Gaps = 18/293 (6%)

Query: 9   YALVPG-ANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIAR 67
           +ALVP   NL+AY+  VN +PLLT EQE++ A  L  + DL AA Q+V++HLR VV I+R
Sbjct: 22  WALVPPLGNLDAYISAVNRLPLLTLEQEQQAARRLRDDNDLDAAGQLVMSHLRLVVSISR 81

Query: 68  SYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKV 127
            Y GYGL   DLIQEGNVGLMKAVKRF+P+ GVRLVS+A+HWIKAEIHE+IL+NWR+VK+
Sbjct: 82  QYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYILKNWRMVKL 141

Query: 128 ATTKAQRKLFFNLRSQKK-----------RLAWLNNEEVHRVAESLGVEPREVREMESRL 176
           ATTKAQRKLFFNLRS+K+               L++ EV  +A  L V+P EVREME+RL
Sbjct: 142 ATTKAQRKLFFNLRSRKQGFRADALDGDTHREVLSDNEVGVMARELNVKPEEVREMETRL 201

Query: 177 TGHDMAFDPAAEADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDR 236
           +G D+  DPA   D + +F  P  YL D  ++P   LE A     +   +  A+  LD+R
Sbjct: 202 SGGDVVLDPAPGDDGEDSF-GPIAYLADATHEPTAVLESAQRDALATEGVARAMSELDER 260

Query: 237 SRDILYQRWL-----AEEKATLHDLAQKYNVSAERIRQLEKSAMNKLKLSIAA 284
           SR I+ +RWL          TLH+LA +Y VSAER+RQ+E +AM K++ ++AA
Sbjct: 261 SRRIVSERWLKVNDDGSGGMTLHELAAEYGVSAERVRQIEVAAMKKMRKALAA 313