Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECRC62

 Score =  108 bits (271), Expect = 1e-28
 Identities = 79/265 (29%), Positives = 138/265 (52%), Gaps = 12/265 (4%)

Query: 18  EAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYGLAQA 77
           + Y+  +   PLLT E+E   A       D+ + R+M+ ++LR VV IAR Y   GLA  
Sbjct: 59  QLYLGEIGYSPLLTAEEEVYFARRAL-RGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   I+   R +++      ++L 
Sbjct: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHIVKELN 176

Query: 138 FNLRSQKKRLAWLNNE-EVHRVAESLGVEPREVREMESRLTGHDMAFDPAAEADDDSAFQ 196
             LR+ ++    L++E     +AE L     +V  M  RL     + D     D + A  
Sbjct: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKAL- 234

Query: 197 SPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRW--LAEEKATLH 254
              + L D + +     ED    D+   ++ + L  L+ + R++L +R+  L  E ATL 
Sbjct: 235 --LDILADEKENGP---EDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289

Query: 255 DLAQKYNVSAERIRQLEKSAMNKLK 279
           D+ ++  ++ ER+RQ++   + +L+
Sbjct: 290 DVGREIGLTRERVRQIQVEGLRRLR 314