Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  114 bits (285), Expect = 2e-30
 Identities = 80/272 (29%), Positives = 139/272 (51%), Gaps = 22/272 (8%)

Query: 16  NLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYGLA 75
           +L+ Y+  +  + LLT ++E  LA+ +  E D  A  ++  A+LRFVV +A+ Y   GL+
Sbjct: 17  SLDKYLQEIGKVDLLTADEEVVLAKRIR-EGDQLALEKLTKANLRFVVSVAKQYQNQGLS 75

Query: 76  QADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIV-----KVATT 130
             DLI EGN+GL+KA +RF+   G + +S+AV WI+  I + +    RIV     +V + 
Sbjct: 76  LGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSL 135

Query: 131 KAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHDMAFD-PAAEA 189
               K F  L  + +R           +AE L V   EV +   +++G  ++ D P  + 
Sbjct: 136 NKISKTFSELEQRFER-----EPSPEELAEVLEVTAGEVVD-TMKISGRHVSMDAPFVQG 189

Query: 190 DDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDI--LYQRWLA 247
           +++S      N       D   + +D   +D+    +  AL  L  R  D+  LY     
Sbjct: 190 EENSLLDVLEN-------DGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNG 242

Query: 248 EEKATLHDLAQKYNVSAERIRQLEKSAMNKLK 279
           E   TL ++ +K+N++ ER+RQ+++ A+ +L+
Sbjct: 243 EHAMTLEEIGEKFNLTRERVRQIKEKAIRRLR 274