Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 293 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

 Score =  196 bits (497), Expect = 7e-55
 Identities = 112/270 (41%), Positives = 160/270 (59%), Gaps = 7/270 (2%)

Query: 14  GANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYG 73
           G +L  Y++  +  P+LT E E  LA++     D+ AA ++V +HLR VV IA  Y GYG
Sbjct: 13  GESLSRYINDTHRYPVLTAEDEYMLAKAWTEHGDVDAAHRLVTSHLRLVVKIAGGYRGYG 72

Query: 74  LAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQ 133
           L  +DLI EGN+GLM AVK+F PE G RL ++A+ WIKA I ++ILR+W +VK+ TT AQ
Sbjct: 73  LPLSDLIAEGNLGLMTAVKKFEPERGFRLSTYAMWWIKASIQDYILRSWSLVKIGTTAAQ 132

Query: 134 RKLFFNLRSQKKRLAWLNNEEVH-----RVAESLGVEPREVREMESRLTGHDMAFDPAAE 188
           +KLFF+L   K++L    + ++H      +A  L V   +V  M  R++G   + +    
Sbjct: 133 KKLFFSLGRLKRKLGEYGSGDLHPDSVTSIATDLSVPEDDVVAMNRRMSGPVASLNAPMS 192

Query: 189 ADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRWLAE 248
           AD DS      + L D R      L +   +   +  LHEA+ VL+DR RDIL  R L++
Sbjct: 193 ADGDSG--EWQDLLADERPSVEESLVERGEARQRSALLHEAMAVLNDRERDILTSRRLSD 250

Query: 249 EKATLHDLAQKYNVSAERIRQLEKSAMNKL 278
              TL DL+ +Y VS ERIRQ+E+ A  K+
Sbjct: 251 SPLTLEDLSVRYGVSRERIRQIEEKAFEKV 280