Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 349 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Xanthobacter sp. DMC5

 Score =  140 bits (354), Expect = 5e-38
 Identities = 103/343 (30%), Positives = 159/343 (46%), Gaps = 56/343 (16%)

Query: 96  RWIIPALIVIAIVFPI-FANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAI 154
           R+I P  +V+  + P+   + YLL  +I+  I  +  + LN+++G  G L LG+VAF+ I
Sbjct: 3   RFIAPLFLVVFALLPLGLTDPYLLNALIITGILTICAMSLNLLLGFTGQLSLGHVAFFGI 62

Query: 155 GAYGLALGYQYLGLGFWTVLP-----------------LAAIAAALAGCILGFPVLRMHG 197
           GAY  AL      LGF   LP                 LA +   L G ++G    R+ G
Sbjct: 63  GAYVSAL----TALGFDVSLPFGLRVTHEGGSPLLGFVLAIVLTGLCGYLIGRLSFRVRG 118

Query: 198 DYLAIVTLGFGEIIRLVLNNWLSFTGGPNGM--------PVPSPTFLGLEFGKRAKDGGI 249
            Y  IVT+ F E++RLV  NW+  T GP  +        PVPS   LG            
Sbjct: 119 AYFVIVTISFAEVVRLVALNWVELTQGPLALTAIPNMVLPVPS---LG------------ 163

Query: 250 PFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMG 309
                   D     K    Y+VL + V + L I  RL     GRA   L+E+E    S+G
Sbjct: 164 --------DVALRSKMQNYYLVLAVGVASYLLIA-RLVASRFGRAMRGLKENESLALSLG 214

Query: 310 LNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGGMGSTVGV 369
           +N       A T+ A+ AG AG  +A Y   ++P  F F  +  ++ +VV GG G+  G 
Sbjct: 215 INATRTLTVAATVSAAMAGAAGSLYAHYIRIIDPDVFLFSYTVTMVIMVVSGGKGTLAGP 274

Query: 370 VIAAFVLTVAPELLRSF--SEYRVLLFGVLMVVMMIWRPRGLI 410
           ++   +  + P  LR     E + +++G +++ ++   PRG++
Sbjct: 275 LVGGIIFGLLPVALRPVMAPEAQWIVYGAILIAILFLMPRGIV 317