Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 643 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  126 bits (317), Expect = 2e-33
 Identities = 85/309 (27%), Positives = 157/309 (50%), Gaps = 25/309 (8%)

Query: 101 ALIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLA 160
           AL++ A+      + Y + ++I  LI  L    L+ ++G AG+   G+ A++ +GAYG A
Sbjct: 330 ALMLAALPLLTVNSPYTMVLMIDLLIAALFATSLHFIMGPAGMHSFGHAAYFGLGAYGAA 389

Query: 161 LGYQYLGLGFWTVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLS 220
           L  + L L     L +A + AAL   + G+  +R+ G YLA++TL F +I   +   W S
Sbjct: 390 LLVRSLHLPMEVALLVAPVVAALGALVYGWFAVRLSGVYLAMLTLAFAQITWAITYQWDS 449

Query: 221 FTGGPNGMPVPSPTFLGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIVLFLVVLAVL 280
           FTGG NG+    P+                       ++  N K  + ++ L LV   V 
Sbjct: 450 FTGGSNGLTGVWPS-----------------------EWLSN-KQAYYWLTLVLVGAGVW 485

Query: 281 YIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGF 340
           +++ R+   P G A  A R+  +   ++G++   ++ +AF I  + AGLAG  +A  +G 
Sbjct: 486 WLR-RVLFSPFGYALRAGRDSVLRADAIGIDVKRMQWAAFVIAGTVAGLAGALYAFSKGS 544

Query: 341 VNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVV 400
           ++P S +  +S   L +V+LGG+ +  G V+ A   T   + +   ++Y   + G ++++
Sbjct: 545 ISPESLSVGKSVDGLVMVLLGGIQTLAGPVVGAVTFTWLHDTVARNTDYWRAMLGAIILI 604

Query: 401 MMIWRPRGL 409
           +++  P+G+
Sbjct: 605 LVLLFPQGI 613



 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 33/291 (11%)

Query: 133 GLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLG--LGFWTVLPLAAIAAALAGCILGF 190
           GL+++ G+  +++  + +F+ +G Y        LG  LGFW  L +AA+A  + G ++  
Sbjct: 26  GLSLIFGVTRIVNFAHGSFFMVGIYVAYTLVDKLGSSLGFWPALLIAAVAVGVLGALIEV 85

Query: 191 PVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPVPSPTFLGLEFGKRAKDGGIP 250
            +LR       +  L     + LV+ + + +  GP+ +  P     GL+          P
Sbjct: 86  VLLRRIYKAPELFQLLATFALVLVIKDAVLWLWGPDELLGPRAP--GLKGSVEILGRQFP 143

Query: 251 FHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGL 310
            ++ F I   P        +VL LV L        LTR   G    A  +D     ++G+
Sbjct: 144 SYDLFLIVVGP--------LVLGLVWLL-------LTRTRFGTLVRAATQDREMVSALGV 188

Query: 311 NHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVV 370
           N   +  + F +GA  AGL G      +            +A +  +VV+GGMGS  G  
Sbjct: 189 NQAWLFTAVFALGALLAGLGGALQLPREPATLEMDLNTIGAAFV--VVVVGGMGSLPGAY 246

Query: 371 IAAFVLTVAPELL------------RSFSEYRVLLFGVLMVVMMIWRPRGL 409
           +AA ++     +              SFS+  +++  ++M ++++WRP GL
Sbjct: 247 VAALLIAEIKAVCIWLGVVQIFGIDVSFSKLTLMVDFLVMAIVLVWRPWGL 297