Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 609 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  180 bits (457), Expect = 9e-50
 Identities = 140/414 (33%), Positives = 204/414 (49%), Gaps = 48/414 (11%)

Query: 11  KSVVDTVLAGLISLVVFGPIVGVVLDGYSFNLEPARVALLVAIVMVGRFAMSLFLQT--- 67
           K VV TV+ G+ +  V G IVG +L G    +E   VA+L        FA +L L     
Sbjct: 227 KGVVATVVGGVGN--VPGAIVGSLLLGL---IESYGVAIL-GTPYRNLFAFALLLVILVW 280

Query: 68  -PKGV----KILQGFESTGSGVHVLAPDYKSRLRWIIP-----ALIVIAIVFPIF-ANKY 116
            P G+    + L     TG+ +    P       W +P     AL   A   P+F  + Y
Sbjct: 281 KPNGLFGRKRALPPEPLTGTFIAPSKP-------WRVPPRLLLALFAAAAALPLFDPSPY 333

Query: 117 LLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLPL 176
           LL  +    +Y  L L L +V G  G + LG+    AIGAY  +L    L L   T + L
Sbjct: 334 LLQTLTNAWLYGALALSLTLVAGTIGQISLGHAGLLAIGAYASSLLVLDLHLPVGTGIVL 393

Query: 177 AAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPVPSPTFL 236
           A I  +L G  L FP  R+ G Y++I TLG GEI+ L + NW S T GP G+        
Sbjct: 394 AGILTSLIGTALIFPAFRLRGHYVSIATLGIGEIVALTILNWESLTHGPIGV-------- 445

Query: 237 GLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWE 296
                      GIP    FG D + N     IY   F  ++ +  ++ RL R  +GR + 
Sbjct: 446 ----------SGIPPLSLFGRDASSNEA---IYWASFGAMVLLALLQWRLLRSHLGRTFR 492

Query: 297 ALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILA 356
           A+REDE+A R+ G++    K  AF  G   AG++G F A    ++N  +F    S L L 
Sbjct: 493 AVREDEVAARAYGVSPDRYKALAFGFGGFAAGVSGAFTAHMYSYINHETFGSQISILALT 552

Query: 357 IVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVVMMIWRPRGLI 410
           +V+LGG+G+  G ++ A  L   PEL R  +EYR+L++GV +++++ +RP+GL+
Sbjct: 553 MVILGGLGNISGALLGAVALVSLPELFRVTAEYRMLIYGVALLLLIRFRPQGLL 606



 Score = 77.8 bits (190), Expect = 9e-19
 Identities = 77/309 (24%), Positives = 139/309 (44%), Gaps = 47/309 (15%)

Query: 116 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLP 175
           Y +  +I+G IY LL +GL ++ G++ L++  + + Y +GAY       YL     T LP
Sbjct: 9   YTVNGLIIGNIYALLAVGLALIFGVSHLINFAHGSVYTVGAYIGWASITYLH----TPLP 64

Query: 176 LAAIAAALAGCILGFPVLRMHGDYLA--------IVTLGFGEIIRLVLNNWLSFTGGPNG 227
           +      L    LG  + R+    L         + T+G   ++ +++   L F+  P  
Sbjct: 65  VTIALVVLGSGALGMLIERVGLRPLQGAARIAPLLATIGISFVLDILVQ--LVFSPDPRS 122

Query: 228 MPVPSPTFLGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIV-LFLVVLAVLYIKHRL 286
           +P   P +       R + G               I  L I I  + +   AVL+   R 
Sbjct: 123 LPTQLPDW-------RLRIG------------TGTIGALDILIAGIGIASAAVLFGFLRF 163

Query: 287 TRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSF 346
           T++  G A  A  +D  A + MG++   V  + F I A+  GL+G+    Y   ++P + 
Sbjct: 164 TKL--GWAVRATAQDRDAAQQMGVDVDRVNQTVFAIAAALGGLSGLLVGMYYNNISP-AM 220

Query: 347 TFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSF------SEYRVLLFGVLMVV 400
           +F  +   +   V+GG+G+  G ++ + +L     L+ S+      + YR L    L++V
Sbjct: 221 SFQATLKGVVATVVGGVGNVPGAIVGSLLL----GLIESYGVAILGTPYRNLFAFALLLV 276

Query: 401 MMIWRPRGL 409
           +++W+P GL
Sbjct: 277 ILVWKPNGL 285