Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 361 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  147 bits (370), Expect = 7e-40
 Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 33/320 (10%)

Query: 102 LIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLAL 161
           L+V  +  P     Y L  +    IY ++ +GL ++ G  G   +G+ AF  +GAY  A 
Sbjct: 28  LLVALLAAPWLLPDYWLAQLTFVFIYAIVAVGLMLLAGFTGQFSIGHAAFMGVGAYTEAW 87

Query: 162 GYQYLGLGFWTVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSF 221
                G  F   L  A   +A  G I+G P LR+ G YL I TL FG I+  VL  W S 
Sbjct: 88  -LAARGWPFPVSLACAMGLSAAVGVIVGLPALRVKGMYLGIATLSFGFIVEEVLARWESV 146

Query: 222 TGGPNGMPVPSPTFLGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIV-LFLVVLAVL 280
           TGG  G  V  P  L                  FG  ++ +  F F+ +V L  +VL+ L
Sbjct: 147 TGGSAGQSV-KPMAL------------------FGWTFDSDRSFYFVCLVCLVCMVLSTL 187

Query: 281 YIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGF 340
            + + L R P GRA+ A+R+ E++ +SMG++    K  +F I A+ AGL G  +A    F
Sbjct: 188 AVLN-LLRAPTGRAFVAIRDSEVSAQSMGIHLARYKSLSFGISAALAGLGGALYAHKMTF 246

Query: 341 VNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSE-----------Y 389
           ++P  F   +S  +L +VV+GG+GS  G    A  L  AP+++  F +            
Sbjct: 247 ISPDQFNLVQSIDLLLMVVIGGLGSMHGAFFGAIFLIGAPQVIALFKDLLPPAIGQATGL 306

Query: 390 RVLLFGVLMVVMMIWRPRGL 409
           + +++G++++  +++ P G+
Sbjct: 307 QAVVYGLVLIAFVMFEPMGI 326