Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 415 a.a., high-affinity branched-chain amino acid ABC transporter permease LivM from Magnetospirillum magneticum AMB-1

 Score =  355 bits (910), Expect = e-102
 Identities = 196/404 (48%), Positives = 265/404 (65%), Gaps = 17/404 (4%)

Query: 13  VVDTVLAGLISLVVFGPIVGVVLDGYSFNLEPARVALLVAIVMVGRFAMSLFLQTPKGVK 72
           VVD +L G+++  +  P++GV L+  S  L     +L   +  V   A S+      G +
Sbjct: 10  VVDALLGGVVAAAMALPMLGVRLEDGSTGL-----SLSGRLDWVAWAAGSV-----AGAR 59

Query: 73  ILQGFES---TGSGVHVLAPDYKSRLRWIIPALIVIAIVFPI--FANKYLLTVVILGLIY 127
           +L G       G G  + AP  ++ + ++  A++  A++ P   F+ + L+    L LIY
Sbjct: 60  LLIGLLRLGLAGRGPSLPAPP-RAMMVYVGWAMVAFALILPFLPFSGRNLVDKATLVLIY 118

Query: 128 VLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLPLAAIAAALAGCI 187
           V+LG GLNIVVGLAGLLDLG+VAFYA+GAY  AL  Q  GL FW  LPLA + AA  G +
Sbjct: 119 VMLGWGLNIVVGLAGLLDLGFVAFYAVGAYSYALLSQTFGLSFWVCLPLAGLLAAAFGMV 178

Query: 188 LGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMP-VPSPTFLGLEFGKRAKD 246
           LGFPVLR+ GDY+AIVT+G GEI+R+VL NW   TGGPNG+  +  P+  GL F     +
Sbjct: 179 LGFPVLRLRGDYIAIVTMGLGEIVRVVLQNWQDVTGGPNGISGIERPSLFGLSFKMVPPE 238

Query: 247 GGIPFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACR 306
           G   F EFFG+DY+ + + +F+Y ++  + L    I  R+ R+PVGRAWEALREDEIACR
Sbjct: 239 GSQTFAEFFGLDYSADHRVIFLYFLILALALLTNVITLRIRRLPVGRAWEALREDEIACR 298

Query: 307 SMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGGMGST 366
           S+G+N  LVKLSAF  GA  AG AG FFA+ QGF++P SFTF ESA+ILAIVVLGGMGS 
Sbjct: 299 SLGINPTLVKLSAFATGAMFAGFAGSFFATRQGFISPESFTFIESAVILAIVVLGGMGSQ 358

Query: 367 VGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVVMMIWRPRGLI 410
           +G+V+AA +L   PE  R   ++R+L FG  MV++M+W+P GL+
Sbjct: 359 IGIVLAALLLVGLPEWFRELQQFRMLAFGGAMVLIMLWKPAGLL 402