Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 618 a.a., ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  137 bits (344), Expect = 1e-36
 Identities = 103/398 (25%), Positives = 180/398 (45%), Gaps = 42/398 (10%)

Query: 16  TVLAGLISLVVFGPIVGVVLDGYSFNLEPARVALLVAIVMVGRFAMSLFLQTPKGVKILQ 75
           +VL   ++ V+ G      L+ +   + P    +L  +VM     +  +    K   +++
Sbjct: 241 SVLGAFLAAVIIGE-----LNAFGILIFPQLTLVLTFLVMAVILVVRPWGLLGKPEMVMR 295

Query: 76  GFESTGSGVHVLAPDYKSRLRWIIPALIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLN 135
           G    G GV         R R +  A +V+ +  P+    Y L+V    LI+ L    L+
Sbjct: 296 G----GGGVERPIRPLTQRGRNVAFAGLVVLLALPMVGGSYGLSVASEVLIFALFAASLH 351

Query: 136 IVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLPLAAIAAALAGCILGFPVLRM 195
            ++G  G++  G+ A++ +G+YG AL  +Y G+     L    + AA A  + G+  +R+
Sbjct: 352 FMMGTGGMVSFGHAAYFGLGSYGAALMVKYFGIPMLAALVTGPLLAAAAALVFGWFCVRL 411

Query: 196 HGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGM----PVPSPTFLGLEFGKRAKDGGIPF 251
            G YLA++TL F +I   V+  W SFTGG NG+    P P                    
Sbjct: 412 AGAYLAMLTLAFAQIAYAVVFQWSSFTGGDNGLIGIWPAPWAA----------------- 454

Query: 252 HEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLN 311
                   NP     F Y+ L L    +L ++ R+T  P G    A R+  +   S+G+N
Sbjct: 455 --------NP---VAFYYLTLALCGGGILAVR-RITFAPFGYTLRACRDSALRADSIGIN 502

Query: 312 HVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVI 371
               + + F +    AG+AG  +A  +G V P + +   S   L +V+LGG+ +  G V+
Sbjct: 503 LSSHRWAGFALAGFFAGIAGSLYAFLKGSVFPDTISIATSVDGLVMVLLGGVQTLTGPVV 562

Query: 372 AAFVLTVAPELLRSFSEYRVLLFGVLMVVMMIWRPRGL 409
            A V       + S+++      GV+++V+++  P+G+
Sbjct: 563 GALVYKTLHVTISSYTDQWRTALGVIIIVLVVAFPQGI 600



 Score = 85.5 bits (210), Expect = 4e-21
 Identities = 78/289 (26%), Positives = 134/289 (46%), Gaps = 28/289 (9%)

Query: 129 LLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLG----LGFWTVLPLAAIAAALA 184
           L+  GL+I+ G++ +++  + +FY +GAY      Q L      GFW  + LAA A AL 
Sbjct: 20  LVASGLSIIFGVSRIVNFAHGSFYMLGAYMAFTLVQKLSGGTVFGFWGAIVLAAAAVALV 79

Query: 185 GCILGFPVLRM--HGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPVPSPTFLGLEFGK 242
           G ++   +LR       L  +   FG +  L++ + +    GP  +  P    L      
Sbjct: 80  GAVVEMVLLRRIYQAPELLQLLATFGLV--LIVQDLVLVLWGPEDLLGPRAPGL------ 131

Query: 243 RAKDGGIPFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDE 302
               G I   + FG  +    ++ F+ I+L  VVL +L++    TR   G    A  +D 
Sbjct: 132 ---KGAI---DIFGQSFP---QYDFVLIILGPVVLGLLWLLFHRTRW--GTLIRAATQDR 180

Query: 303 IACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGG 362
               ++G+N   +  S FT+GA  AGL G      +   +         A +  IVV+GG
Sbjct: 181 EMVAALGVNQAWLFTSVFTLGAFLAGLGGAVQLPREAVNHVMDLQIITEAFV--IVVIGG 238

Query: 363 MGSTVGVVIAAFVLTVAPEL-LRSFSEYRVLLFGVLMVVMMIWRPRGLI 410
           +GS +G  +AA ++       +  F +  ++L  ++M V+++ RP GL+
Sbjct: 239 LGSVLGAFLAAVIIGELNAFGILIFPQLTLVLTFLVMAVILVVRPWGLL 287