Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 465 a.a., ABC transporter, membrane spanning protein (branched chain amino acid) from Agrobacterium fabrum C58

 Score =  310 bits (794), Expect = 6e-89
 Identities = 188/438 (42%), Positives = 261/438 (59%), Gaps = 35/438 (7%)

Query: 2   SAAKPIDIKKSVVDTVLAGLISLVVFGPIVGVVL-----DGYSFNLEPARVALLVAIVMV 56
           +A+ P  +  ++ + ++AG+IS  +F   +G++      +   +      +A+ VA+  V
Sbjct: 9   AASSPSLMATAMKEGLIAGVISFGMFILYIGIITYQDINNQLIWGTRWGLLAIFVAVAAV 68

Query: 57  GRFAMSLFLQTPKGVKILQGFESTGSGVHVLAPDYKSRLRWIIPALIVIAIVFPIFAN-- 114
           GRF +  F++     + L       SGV  ++ +     +  +   +V+ +++P+ A   
Sbjct: 69  GRFLVVGFIKPSLDRRKLS---KAKSGVLEISEEKGFFHKHFLKFALVLLLLYPVIAVQL 125

Query: 115 -------KYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLG 167
                  K++    I  LIYV+L  GLNIVVGLAGLLDLGYVAFYA+GAY  AL     G
Sbjct: 126 FGFQGSLKFVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYSYALLSSQFG 185

Query: 168 LGFWTVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNG 227
           L FW +LP+A I A   G ILGFPVLR+ GDYLAIVTL FGEIIRLVL NW + T G  G
Sbjct: 186 LSFWVLLPVAGILAGFWGVILGFPVLRLRGDYLAIVTLAFGEIIRLVLLNWTAVTKGTFG 245

Query: 228 MPVPSPTFLGLEFGKRAKDGGIP--FHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHR 285
           +   S       FG  + D G P  F + FG+  +     +F++ V+ L+ +   Y+  +
Sbjct: 246 I---SGIAKASVFGIWSFDVGAPNNFAKVFGLSMSSAYYKIFLFYVILLLCMLTAYVTIK 302

Query: 286 LTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSS 345
           L RMP+GRAWEALREDEIACRS+G++ V+ KL+AF  GA   G AG FFA+ QGFV+P S
Sbjct: 303 LRRMPIGRAWEALREDEIACRSLGIDTVITKLTAFATGAMFGGFAGSFFAARQGFVSPES 362

Query: 346 FTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSF-------------SEYRVL 392
           F F ESA+ILAIVVLGGMGS  G+ IAA V+    ELLR                 YR+L
Sbjct: 363 FVFLESAVILAIVVLGGMGSLTGIAIAALVMVGGTELLREMEFLKHVFGPDFTPELYRML 422

Query: 393 LFGVLMVVMMIWRPRGLI 410
           LFG+ MV++M+++PRG +
Sbjct: 423 LFGLAMVIVMLFKPRGFV 440