Pairwise Alignments

Query, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  140 bits (353), Expect = 4e-38
 Identities = 96/305 (31%), Positives = 163/305 (53%), Gaps = 23/305 (7%)

Query: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIES 65
           LQ L++G+  G +YGLIA+G+ ++Y     ++FA G++ M+ A+ A   ++L   FG+  
Sbjct: 4   LQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAFGAFAGMSL---FGMPF 60

Query: 66  FPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQGA 125
           +   IL      VV    +G ++E V  + +    + + ++  IGI+ + +    +  G 
Sbjct: 61  WLAAILA-----VVAMAAFGVLLELVVIRSILGQPQFSIVMLTIGIAYVARGVITMVPGI 115

Query: 126 KQQGIPTLLAGAWRVDI---GSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCRA 182
             +     LA  ++  I   G   V L    + I  A   G  LL  + +Y+KLG   +A
Sbjct: 116 GTE--THTLAVPYKDQIWKLGELVVNLEQLAIIIATAVLCG--LLFAMFRYSKLGIAMQA 171

Query: 183 TQQDRKMASILGINTDRVISYVFVIGAAMAALAGVL---ITLNYGTFDFYAGFIIGIKAF 239
           + Q++  A  +GI   R+   V+ + AA+AA+AG+L   IT  +    F     IG+KAF
Sbjct: 172 SSQNQLAAYYMGIPVKRLNGLVWGLAAAVAAIAGMLLAPITFVHANMGF-----IGLKAF 226

Query: 240 TAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLGRP 299
            AAV+GG GSLPGA++GG+++GI ES     +   +KD   + +++++L+ +P GL G  
Sbjct: 227 PAAVVGGFGSLPGAIVGGLVIGIVESFAGFYLPDGFKDTAPYIVVLLMLMIKPNGLFGEK 286

Query: 300 LVAKV 304
           L  KV
Sbjct: 287 LRKKV 291