Pairwise Alignments

Query, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 609 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  205 bits (521), Expect = 2e-57
 Identities = 112/296 (37%), Positives = 178/296 (60%), Gaps = 15/296 (5%)

Query: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIE 64
           F    VNGL +G++Y L+A+G  +++G+  +INFAHG VY + AY+   S+  L      
Sbjct: 6   FFDYTVNGLIIGNIYALLAVGLALIFGVSHLINFAHGSVYTVGAYIGWASITYL------ 59

Query: 65  SFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQG 124
             PL +  T+   V+ +G  G +IERV  +PL+ + R+APL++ IGIS +L    Q+   
Sbjct: 60  HTPLPV--TIALVVLGSGALGMLIERVGLRPLQGAARIAPLLATIGISFVLDILVQLVFS 117

Query: 125 AKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAF--AGMALLTYVIKYTKLGRMCRA 182
              + +PT L   WR+ IG+G    T   + IL+A    A  A+L   +++TKLG   RA
Sbjct: 118 PDPRSLPTQLPD-WRLRIGTG----TIGALDILIAGIGIASAAVLFGFLRFTKLGWAVRA 172

Query: 183 TQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTAA 242
           T QDR  A  +G++ DRV   VF I AA+  L+G+L+ + Y        F   +K   A 
Sbjct: 173 TAQDRDAAQQMGVDVDRVNQTVFAIAAALGGLSGLLVGMYYNNISPAMSFQATLKGVVAT 232

Query: 243 VLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLGR 298
           V+GG+G++PGA++G ++LG+ ES    ++ + Y+++F+F+LL+VIL+++P GL GR
Sbjct: 233 VVGGVGNVPGAIVGSLLLGLIESYGVAILGTPYRNLFAFALLLVILVWKPNGLFGR 288



 Score = 94.4 bits (233), Expect = 6e-24
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 35/299 (11%)

Query: 9   LVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIESFPL 68
           L+  LT   +YG +A+  T+V G IG I+  H  +  I AY +++ +  L          
Sbjct: 334 LLQTLTNAWLYGALALSLTLVAGTIGQISLGHAGLLAIGAYASSLLVLDLH--------- 384

Query: 69  LILGT-LIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQG-AK 126
           L +GT ++   ++T + G  +   A++   +   +A L     ++L + N+  +  G   
Sbjct: 385 LPVGTGIVLAGILTSLIGTALIFPAFRLRGHYVSIATLGIGEIVALTILNWESLTHGPIG 444

Query: 127 QQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGM---ALLTYVIKYTKLGRMCRAT 183
             GIP L          S F +   +   I  A+F  M   ALL + +  + LGR  RA 
Sbjct: 445 VSGIPPL----------SLFGRDASSNEAIYWASFGAMVLLALLQWRLLRSHLGRTFRAV 494

Query: 184 QQDRKMASILGINTDRVISYVFVIGAAMAALAGVLIT-----LNYGTFDFYAGFIIGIKA 238
           ++D   A   G++ DR  +  F  G   A ++G         +N+ TF    G  I I A
Sbjct: 495 REDEVAARAYGVSPDRYKALAFGFGGFAAGVSGAFTAHMYSYINHETF----GSQISILA 550

Query: 239 FTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLG 297
            T  +LGG+G++ GA+LG + L     LF   + ++Y+ +     L++++ FRPQGLLG
Sbjct: 551 LTMVILGGLGNISGALLGAVALVSLPELFR--VTAEYRMLIYGVALLLLIRFRPQGLLG 607