Pairwise Alignments

Query, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 290 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  140 bits (354), Expect = 3e-38
 Identities = 86/297 (28%), Positives = 157/297 (52%), Gaps = 18/297 (6%)

Query: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGI 63
           I L  ++NGLT G+VY LIA+G T++YG++ +INFAHG   M++ Y       L   +GI
Sbjct: 6   ILLPSVLNGLTTGAVYALIAVGLTLIYGVLHIINFAHGASLMLALYAVYF---LKERWGI 62

Query: 64  ESFPLLILGTLIFTVVVTGVY--GWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQI 121
           + +       +   + + G++  G+ ++R+      +      L++ +GI+++++N A +
Sbjct: 63  DPY-------MALPIAIVGMFALGYALQRIVINRAGHGKDENILLATLGIAIVMENLALL 115

Query: 122 AQGAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCR 181
              +  + I T  + +    +  G   +   K+     A     +L +++  T LGR  R
Sbjct: 116 LFKSDTRSIDTAYSLS---TVAIGPAMIAVPKLVAFAGALVVSGVLFWIMGRTDLGRAIR 172

Query: 182 ATQQDRKMASILGINTDRVISYVFVIG-AAMAALAGVLITLNYGTFDFYAGFIIGIKAFT 240
           A  ++++ A ++GI+ D V +  F IG A + A A  L+   Y       GF+  + AFT
Sbjct: 173 AVAKEKEGAKLMGIDVDHVYAMSFGIGLACLGAAACFLLPAYYVNPQVGGGFV--LVAFT 230

Query: 241 AAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLG 297
             VLGG+GS  GA++GG ++G+ ESL    +      +  F++ + +++FRPQG+ G
Sbjct: 231 IVVLGGMGSFVGALIGGFLVGVVESLGGLYLGESLGQIGIFAIFIGVVLFRPQGMFG 287