Pairwise Alignments
Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417
Subject, 2069 a.a., Signal transduction histidine kinase CheA from Variovorax sp. SCN45
Score = 484 bits (1245), Expect = e-140
Identities = 349/1085 (32%), Positives = 534/1085 (49%), Gaps = 139/1085 (12%)
Query: 968 EAEQAHEALISMLDQLAAGQEISPAPARVEALRE-------LLDEALDPSATGLIKSDGS 1020
E EQA EA AA E PAPA +EA E ++ E L P +
Sbjct: 995 EPEQAPEA--------AAEPEPEPAPAAIEAAPEPEPEPAPVIAEVLAPIVEAPAAPVEA 1046
Query: 1021 RVLSVSELGA-------------ATQQLGHETERDDEI------------VEIFLEEAVD 1055
++L E+ A +++ + +D++ ++L EA +
Sbjct: 1047 QILVADEVPEPVEAHAPAQPPHQAVEEIAVSSSAEDQVKVIGPLRIGIALYNVYLNEADE 1106
Query: 1056 ILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAIGDLAHELECLYEGLVD 1115
+ W LE P S++ H+L G + ++ +A E + L
Sbjct: 1107 WSRQLATDVGEWALESHERLPDSTVAL-AHSLAGSSATVGFHSLSGMARLFESALQHL-Q 1164
Query: 1116 RRYSYTAELSHVLMASHERLALQLEELH------------------HHQPLSDSAELIAR 1157
+ S + E VL+A+ + L L + + P+ + A
Sbjct: 1165 MQGSGSREQGMVLVAAADELRRLLHQFAVGFLRDPAEGTLQALRDIANSPMPTEIAMRAE 1224
Query: 1158 VRALRQGSAPAAPA---------AAPPASGADPELLDIFLEEAADILDSSSAALSRWQAE 1208
R L+Q + + A A A D +L IF EEAA++L +L +W
Sbjct: 1225 ARPLQQVVSSDSIADVALDDSEDAIDLADAVDVDLFPIFEEEAAELLPQLGESLRQWAHH 1284
Query: 1209 PGNRQEVETLLRDLHTLKGGARMVEIAPIGDLAHELEFLYEGLSA------------GLL 1256
P + +LR LHTLKG AR+ +G+ AH +E E L + G L
Sbjct: 1285 PDDSAPRAAVLRTLHTLKGSARLAGAMRLGERAHRMESEIELLGSQGAERADIEKLLGRL 1344
Query: 1257 APSPELFALLQGCHD----RLAQMIDAVADGLPVGSVDKLIERIKTLVHPSDEPVTPVA- 1311
F L+ D LAQ++ + + P + ++ V +DE PVA
Sbjct: 1345 DALQATFDALRAADDATQVELAQLVASASASAPAAQLVQVAPEAG--VPANDESAAPVAG 1402
Query: 1312 --------------------LPAGKAEAVVDPM----ADMVKISAELLDDLVNLAGETSI 1347
L A A++ P+ + V+I +LLD LV GE I
Sbjct: 1403 DEDGETADDIAAAAPATASALQPRPAPALLAPLRAVSSQAVRIRTQLLDRLVAQTGEVII 1462
Query: 1348 FRGRIEQQVNDARIALTEVETTIERMRDQLRRLDTETQGRILSRQQAEAERLGYEDFDPL 1407
R R+E ++ R +L ++ ++R+R QLR ++ + + ++ SR + + FDPL
Sbjct: 1463 TRSRLEAELGQLRGSLADLTGNLDRLRQQLRDIEVQAESQMQSRLAQAKD--SQQSFDPL 1520
Query: 1408 EMDRHSQLQQLSRALSESASDLLDLKDTLERRNEDAHDLLQQQARINTELQEGLMRTRMV 1467
E DR +++Q+L+R ++ES +D+ ++ TL++ + D L QAR ELQ GL+RTRMV
Sbjct: 1521 EFDRFTRVQELTRMMAESVNDVATVQRTLQKTVQATEDDLSVQARQTRELQRGLLRTRMV 1580
Query: 1468 PFERMLPRLKRIVRQVAEELGKDVEFIVGNAEGEMDRNVLERMAAPLEHMLRNAVDHGLE 1527
FE + RL R+VRQ +++ GK V + EMDR VL+RM EH+LRN V HG+E
Sbjct: 1581 EFEGISDRLYRVVRQASKDTGKQVRLDIVGGSIEMDRGVLDRMTPAFEHLLRNCVAHGIE 1640
Query: 1528 SRDARLLAGKPEKGRITLDLTHEGGDIVFDMRDDGAGVPLEAVRRKAIKRGLLDPNQDIS 1587
AR AGK G I +DL HEG D+ RDDGAG+ + + +A GL+ +Q++S
Sbjct: 1641 DAAAREKAGKDASGLIVIDLHHEGNDVSVSFRDDGAGLDRKRIAERARVLGLIGADQELS 1700
Query: 1588 DRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLP 1647
+ + I +PGFSTA ++++++GRG+GMDVV ++ LGG + STPG+G F++ LP
Sbjct: 1701 AEEATELIFKPGFSTAGQVSELAGRGIGMDVVRAQIAALGGRIETHSTPGQGTTFKLVLP 1760
Query: 1648 FTVSVNRALMVQCADDQYAIPLNTIEGLVRVLPHELAGHYQQDPPRYEYAGQRYELFYLG 1707
T +V +M++ + +P N +E + RV +L Y + + + ++ ++ G
Sbjct: 1761 LTTAVTHVVMLRAGEVSIGVPSNLVELVQRVSGTDLDAAYLHN--SHPFGSEQVPFYWAG 1818
Query: 1708 DLLHTVSRPKLLGHYQPVPVLLVQCNERRVAIHVDAMAGTREIVVKGLGPQFAGVQGLSG 1767
LL +R + +++V+ +RVA+HVD + G +E+VVK LGPQ A + GL+G
Sbjct: 1819 ALLQASTRSEHAAAKNNT-LVVVRSAAQRVALHVDEVLGNQEVVVKNLGPQLARLPGLAG 1877
Query: 1768 ATILGDGRVVLIIDLLA-------HIRARQ----PALPAQTA---------DLPLILNDP 1807
++L G V LI + +A R RQ A PA+ A P++L P
Sbjct: 1878 ISVLASGAVALIYNPVALAAVHGEQARERQAAALAAAPARAAAAEAEQGVPQEPVVL-AP 1936
Query: 1808 LKKRPLLVLVVDDSVTVRKVTSRLLERNGMNVLTAKDGIDALAVLEEHTPDLMLLDIEMP 1867
+ + LVLVVDDS+TVR+VT RLL+R G V A DG+ AL L++ P ++L DIEMP
Sbjct: 1937 VTPQIPLVLVVDDSITVRRVTQRLLQREGYRVSLAADGLQALERLQQERPAVVLSDIEMP 1996
Query: 1868 RMDGFEVATQVRNDPRLMRLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQESVLLESI- 1926
RMDGF++A +R D L LPIIMITSR +KHRD A +GVN YLGKPY E LL +
Sbjct: 1997 RMDGFDLARNIRADSALAELPIIMITSRIAEKHRDYARTLGVNHYLGKPYSEEELLRLVR 2056
Query: 1927 AYWSK 1931
AY S+
Sbjct: 2057 AYTSE 2061
Score = 102 bits (255), Expect = 4e-25
Identities = 191/821 (23%), Positives = 319/821 (38%), Gaps = 135/821 (16%)
Query: 6 DYVALEWVKGDIAETLKQARSALDAYVET------SDGDAISECLAAVHQVHGALQMVEF 59
D L WV G+I ++L +L +V D ++ +HQ GALQMV
Sbjct: 20 DLGPLAWVLGEIQKSLDGVGKSLRRFVRDVGTAAEPDSGSLQTARQQLHQAVGALQMVGH 79
Query: 60 YGAALLAEEIEALALALQAAGVSQRDESIRLLQQALNQLPLYLDRVHSARRDLPLVVLPL 119
AL+ IE A + ++ +++A + +L+ + + + + + P
Sbjct: 80 ASPALVLGAIEFAVQGFIADPQRCTEAAVHKIERAGFAVTDFLNALLAGKPVSSVALFPQ 139
Query: 120 LNDLRSARGESLLSETSLFSPQLLTIAPLPDEALAQRAV---PDLKEQL-RQWHQLLQQA 175
D+ G + L+ + P AL Q AV P ++ +L R+ QL++
Sbjct: 140 YRDVLELVGNERVHPADLWGTAWRWVEIKP--ALTQAAVAYDPAVRSRLDREVLQLVKTG 197
Query: 176 LAGLLREDHGPSNLEDMARVFARLETLCQG---APLLP----LWQVTSALVEGMLTGVIA 228
R HG LC G LLP W + + E + G+I
Sbjct: 198 DTQAARRLHG----------------LCLGLGRGALLPRVASFWTLAAGFFEALSLGLI- 240
Query: 229 NSPALRSLLKASDKQLKRLLAQGIGGINQPAPDELLKSLLFYVAKVTRPT-----PRMQS 283
PA + +A+ + L + G + D L + LLF+ A+ PT P +++
Sbjct: 241 --PADAYVKRAASRVLLQYATLARG--DSLVSDRLGQDLLFFCAQAV-PTARDEAPTLRT 295
Query: 284 LKERYGLDEALPDSALVDAERARLAGPDRNAMGSVLGALCEELVRVKERLDLFVRSDRQH 343
++ +G+ + VD + D VL + + KE D
Sbjct: 296 VRNAWGI----ANEPHVDYTVEQFGRFDP----LVLSQARKRIETAKEMWSALSGGDVSR 347
Query: 344 TSDLDALLAPLRQIADTLAVLG-----FGQPRKVIIDQL--AVVLSLVQGQREPNDAVLV 396
T RQ+ADT A LG P ++ L AV SL GQ P+ + +
Sbjct: 348 T----------RQVADTFANLGESLQKLHPPSLPMVQALTHAVEASLRSGQ-PPDTELAM 396
Query: 397 DVAGALLYVEATL-----------------AGMVGTVEPESREENRLP-TTDL------T 432
+VA ++LY+EA L AG + V+ E P DL
Sbjct: 397 EVATSVLYLEAALEDLDPSDPQLTARTLQLAGRIERVQGGGHSEPLEPWMEDLYRRVSDR 456
Query: 433 QIHQLVIRESCQCLKQAKELVIDCIEADWDRQRLESLPELLSQVRGALAMIPLPRAASLM 492
Q V+ E L + ++ + ++ L ++P L Q+RG +++ L +AA +
Sbjct: 457 QTMGTVVDELRSHLSELEKSLDQYFRRPAEKGLLRTVPTQLMQMRGVFSVLGLDQAAHTV 516
Query: 493 RGCTDYVD---------EQLMGNDAPPSE-GQLAHFADVISSLEYYLERMLQDPDAAGER 542
+ D V+ E++ G DA + G L D++ +R+ AGE
Sbjct: 517 QRMRDDVEAMLVSTSPAEEMAGFDALGNNLGALGFLIDMLGYQPALAKRLFVFDAEAGEL 576
Query: 543 ---VLELATHGLAALGYLPAEKPWRQALVAPDGA---------------RAVEVTPSQSQ 584
+ AT AA G + P +A+++ + R +V+P +
Sbjct: 577 KPLMGRQATDSSAADGAAAGQAPAAEAVLSIEEVDAQIASKLAALATPNRKAKVSPIEEF 636
Query: 585 FDALASPTSRLNPPALQRPGSLLPPPADEEPIDDELREVFLEETDEV----LEVLHRNLP 640
+ S T+++ P S LP E +D+L+ +FL+E EV LE +
Sbjct: 637 SNKADSWTNKIAGP------SALPDTEVTELEEDDLQNIFLDEAREVVQNGLEAIAELAS 690
Query: 641 NSADKIAQGEMRRAFHTLKGSGRMVRALVLAELAWAVENLLNRVLERSVTLGPDVQQVLD 700
D +RRAFHTLKGS RMV + AW++E +LN L P++ +
Sbjct: 691 YPDDTEELTILRRAFHTLKGSSRMVGLTEFGDAAWSLEQVLNTWLADQRAATPELLSGTE 750
Query: 701 EAVALLPELIADFAIDDQRQRDEVDALAARAHALASGMPVP 741
+ E + A Q + + + A+AL +G PVP
Sbjct: 751 RTLREFSEWVEAIAA-GQPHSWQAASFSRVANALLAGEPVP 790
Score = 63.9 bits (154), Expect = 2e-13
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 1168 AAPAAAPPASGADPE---LLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLRDLHT 1224
A P+A P + E L +IFL+EA +++ + A++ + P + +E+ L R HT
Sbjct: 648 AGPSALPDTEVTELEEDDLQNIFLDEAREVVQNGLEAIAELASYPDDTEELTILRRAFHT 707
Query: 1225 LKGGARMVEIAPIGDLAHELEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMIDAVADGL 1284
LKG +RMV + GD A LE + A A +PEL + + ++ ++A+A G
Sbjct: 708 LKGSSRMVGLTEFGDAAWSLEQVLNTWLADQRAATPELLSGTERTLREFSEWVEAIAAGQ 767
Query: 1285 PVGSVDKLIERIKTLVHPSDEPVTPVALPAGKAEAV 1320
P R+ + + PV + +A AV
Sbjct: 768 PHSWQAASFSRVANALLAGEPVPPPVRVADAEALAV 803
Score = 58.2 bits (139), Expect = 1e-11
Identities = 79/294 (26%), Positives = 118/294 (40%), Gaps = 25/294 (8%)
Query: 1042 DDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAIGD 1101
+D++ IFL+EA +++ + +++ PD+ L+ L+R HTLKG +RM + GD
Sbjct: 663 EDDLQNIFLDEAREVVQNGLEAIAELASYPDDTEELTILRRAFHTLKGSSRMVGLTEFGD 722
Query: 1102 LAHELE-CLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDSAELIARVRA 1160
A LE L L D+R + T EL + + +E + QP S A +RV
Sbjct: 723 AAWSLEQVLNTWLADQR-AATPELLSGTERTLREFSEWVEAIAAGQPHSWQAASFSRV-- 779
Query: 1161 LRQGSAPAAPAAAPPASGADPELLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLR 1220
+ A PP AD E L + A ++ A++ L
Sbjct: 780 --ANALLAGEPVPPPVRVADAEALAVAARHIAAETPVAAPAVAPLPM---------PALP 828
Query: 1221 DLHTLKGGARMV-EIAPIGDLAHE--LEFLYEGLSAGLLAPSPEL---FALLQGCHDRLA 1274
DL L V + P+ +A E E E L A SPE+ FA
Sbjct: 829 DLPDLSLTPEPVSHVEPVAHVAPEPVPEPALEPLDWHAPAQSPEVDDDFASTDFIDFESK 888
Query: 1275 QMID-AVADGLPVGSVDKLIERIKTLVHPSDEPVTPVALPAGKAEAVVDPMADM 1327
Q + A LP G + KT EPV P PA + E +P+A +
Sbjct: 889 QNTEPAPLLSLPSGDEFDFLAPAKTQARAEPEPVVP---PAAEPEVPAEPVASV 939
Score = 43.1 bits (100), Expect = 4e-07
Identities = 83/342 (24%), Positives = 122/342 (35%), Gaps = 82/342 (23%)
Query: 534 QDPDAAGERVLELATHGLAALGYLPAEKPWRQALVAPDGARAVEV--TPSQSQF---DAL 588
Q P+AA E E A AA+ P +P ++A A VE P ++Q D +
Sbjct: 998 QAPEAAAEPEPEPAP---AAIEAAPEPEPEPAPVIAEVLAPIVEAPAAPVEAQILVADEV 1054
Query: 589 ASPTSRLNPPALQRPGSLLPPPADEEPIDDELR------------EVFLEETDEVLEVL- 635
P P Q P + A +D+++ V+L E DE L
Sbjct: 1055 PEPVEAHAPA--QPPHQAVEEIAVSSSAEDQVKVIGPLRIGIALYNVYLNEADEWSRQLA 1112
Query: 636 ----------HRNLPNS----ADKIAQGEMRRAFHTL----------------KGSGRMV 665
H LP+S A +A FH+L +GSG
Sbjct: 1113 TDVGEWALESHERLPDSTVALAHSLAGSSATVGFHSLSGMARLFESALQHLQMQGSGSRE 1172
Query: 666 RALVLAELAWAVENLLNRVLE--------------RSVTLGPDVQQVLDEAVAL-LPELI 710
+ +VL A + LL++ R + P ++ A A L +++
Sbjct: 1173 QGMVLVAAADELRRLLHQFAVGFLRDPAEGTLQALRDIANSPMPTEIAMRAEARPLQQVV 1232
Query: 711 ADFAIDDQRQRDEVDALAARAHALASGMPVPAAEPHDPMLLEIFRNEAQSHLDSLNHFLH 770
+ +I D D DA + A+ D L IF EA L L L
Sbjct: 1233 SSDSIADVALDDSEDA-------------IDLADAVDVDLFPIFEEEAAELLPQLGESLR 1279
Query: 771 QAAEHVPLQVSDE-LQRALHTLKGSAYMAGVLPIAELARPLD 811
Q A H + R LHTLKGSA +AG + + E A ++
Sbjct: 1280 QWAHHPDDSAPRAAVLRTLHTLKGSARLAGAMRLGERAHRME 1321
Score = 42.0 bits (97), Expect = 9e-07
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 614 EPIDDELREVFLEETDEVLEVLHRNLPNSA----DKIAQGEMRRAFHTLKGSGRMVRALV 669
+ +D +L +F EE E+L L +L A D + + R HTLKGS R+ A+
Sbjct: 1253 DAVDVDLFPIFEEEAAELLPQLGESLRQWAHHPDDSAPRAAVLRTLHTLKGSARLAGAMR 1312
Query: 670 LAELAWAVENLLNRVLERSVTLGPDVQQVLDEAVALLPELIADFAIDDQRQRDEVDALAA 729
L E A +E+ + +L D++++L AL A A DD Q E+ L A
Sbjct: 1313 LGERAHRMESEI-ELLGSQGAERADIEKLLGRLDALQATFDALRAADDATQ-VELAQLVA 1370
Query: 730 RAHALASGMPVPAAE 744
A A A PAA+
Sbjct: 1371 SASASA-----PAAQ 1380
Score = 40.4 bits (93), Expect = 3e-06
Identities = 81/327 (24%), Positives = 124/327 (37%), Gaps = 47/327 (14%)
Query: 750 LLEIFRNEAQSHLDSLNHFLHQAAEHVPLQVSDELQRALHTLKGSAYMAGVLPIAELAR- 808
L ++ NEA L + + A ++ D H+L GS+ G ++ +AR
Sbjct: 1096 LYNVYLNEADEWSRQLATDVGEWALESHERLPDSTVALAHSLAGSSATVGFHSLSGMARL 1155
Query: 809 ---PLDHLTREYKAHR-----LPLDLDEVELLLE----------AEGLFQRGLRDLDSDP 850
L HL + R L DE+ LL AEG Q LRD+ + P
Sbjct: 1156 FESALQHLQMQGSGSREQGMVLVAAADELRRLLHQFAVGFLRDPAEGTLQ-ALRDIANSP 1214
Query: 851 L-------APIKGAEDLINRTQSLLDHQL---EALLDVRIKRDPQLIANFLAQGMDILLD 900
+ A + + +++ + S+ D L E +D+ D L F + ++L
Sbjct: 1215 MPTEIAMRAEARPLQQVVS-SDSIADVALDDSEDAIDLADAVDVDLFPIFEEEAAELLPQ 1273
Query: 901 AENLLRRWQQHPGERQELTALLDELTTLGEGAHVAD-------LHAIDALCEALLDLYGA 953
LR+W HP + A+L L TL A +A H +++ E LL GA
Sbjct: 1274 LGESLRQWAHHPDDSAPRAAVLRTLHTLKGSARLAGAMRLGERAHRMESEIE-LLGSQGA 1332
Query: 954 ----VEE--SSLAVSERFFHEAEQAHEALISMLDQLAAGQEIS-PAPARVEALRELLDEA 1006
+E+ L + F A +A L QL A S PA V+ E A
Sbjct: 1333 ERADIEKLLGRLDALQATFDALRAADDATQVELAQLVASASASAPAAQLVQVAPEAGVPA 1392
Query: 1007 LDPSATGLI-KSDGSRVLSVSELGAAT 1032
D SA + DG ++ AT
Sbjct: 1393 NDESAAPVAGDEDGETADDIAAAAPAT 1419
Score = 31.2 bits (69), Expect = 0.002
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 699 LDEAVALLPELIADFAIDDQRQR-DEVDALAARAHALASGMPVPAAEPHDPMLLEIFRNE 757
++E A + +A A +++ + ++ + +A + + + P+A P D + E+ ++
Sbjct: 607 IEEVDAQIASKLAALATPNRKAKVSPIEEFSNKADSWTNKIAGPSALP-DTEVTELEEDD 665
Query: 758 AQS-HLDSLNHFLHQAAEHVPLQVS--DE------LQRALHTLKGSAYMAGVLPIAELAR 808
Q+ LD + E + S D+ L+RA HTLKGS+ M G+ + A
Sbjct: 666 LQNIFLDEAREVVQNGLEAIAELASYPDDTEELTILRRAFHTLKGSSRMVGLTEFGDAAW 725
Query: 809 PLDHLTREYKA 819
L+ + + A
Sbjct: 726 SLEQVLNTWLA 736