Pairwise Alignments

Query, 1934 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 747 a.a., Chemotaxis histidine kinase CheA from Pseudomonas putida KT2440

 Score =  239 bits (611), Expect = 8e-67
 Identities = 211/771 (27%), Positives = 355/771 (46%), Gaps = 71/771 (9%)

Query: 1042 DDEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAIGD 1101
            D+EI++ FL EA +IL+   + L      PD+A  L+++ R  HT+KGGA   ++  + +
Sbjct: 6    DEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNELVE 65

Query: 1102 LAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDS--AELIARVR 1159
              H  E +++ L        AEL  V++ + + +     ++     ++ +  A L A  R
Sbjct: 66   CCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPALLAALSR 125

Query: 1160 ALRQGSAPA--APAAAPPA-------SGADPELLDIFLEEAADILDSSSAALSRWQAEPG 1210
                G+A A  AP  AP A       + A+ +  DI   E   +LDS  A  ++  A+  
Sbjct: 126  LAEPGAAEAVAAPVPAPVADVVAAAPAEAEEQHQDITDSEFEQLLDSLDAIKAQAAADEQ 185

Query: 1211 NRQEVETLLRDLHTLKGGARMVEIAPIGDLAHELEFLYEGLSAGLLAPSPELFALLQGCH 1270
             + E         T+ G    +  A    L  +L    +  +A + AP            
Sbjct: 186  MQGE---------TVSGAGDEITDAEFESLLDQLHGKGQ-FNAEVAAPP----------- 224

Query: 1271 DRLAQMIDAVADGLPVGSVDKLIERIKTLVHPSDEPVTPVALPAGKAEAVVDP--MADMV 1328
              +A   + V+D +     + L++++              ALPA +A A   P   A   
Sbjct: 225  --VAVSSEVVSDEITDAEFESLLDQLH-----GKGTFQAGALPAAQAPAPAAPDNSAASD 277

Query: 1329 KISAE----LLDDLVN---LAGETSIFRGRIEQQVNDARIALTEVETTIERMRDQLRRLD 1381
            +IS      LLD L       G+ +        Q      A  E +   +          
Sbjct: 278  EISEHEFEALLDQLHGKGKFGGDVAAVEAPAAVQAQAPAAAKAESQPVAKPAAAPAPSPA 337

Query: 1382 TETQGRILSRQQAEAERLGYEDFDPLEMDRHSQLQQLSRALSESASDLLDLKDTLERRNE 1441
            ++      +   A  +    E    + +D  ++L ++   + E    L+ +++ L R   
Sbjct: 338  SKPAAAPRAPAPAAEKHAASEAETTVRVDT-ARLDEIMNMVGE----LVLVRNRLVRLGL 392

Query: 1442 DAHDLLQQQARIN-----TELQEGLMRTRMVPFERMLPRLKRIVRQVAEELGKDVEFIVG 1496
            ++ D    +A  N      +LQ  +M+TRM P +++  R  R+VR +A +L K++   + 
Sbjct: 393  NSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELV 452

Query: 1497 NAEGEMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLDLTHEGGDIVF 1556
              E ++D+N++E +A PL H++RNAVDHG+E  D R  +GK   GR+ L    EG  I+ 
Sbjct: 453  GEETDLDKNLVEALADPLVHLVRNAVDHGIEMPDEREASGKARTGRVVLSAEQEGDHILL 512

Query: 1557 DMRDDGAGVPLEAVRRKAIKRGLLDPN--QDISDRDVLQFILQPGFSTAEKITQISGRGV 1614
             + DDG G+    +R KA+++GL+D +  + +S+ D    I  PGFST  +I+ +SGRGV
Sbjct: 513  SISDDGKGMDPNILRAKAVEKGLMDKDAAERLSESDCYNLIFAPGFSTKTEISDVSGRGV 572

Query: 1615 GMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEG 1674
            GMDVV  ++ QL GS+ I S  G+G    I++P T+++   LMV   +  +A PL  +  
Sbjct: 573  GMDVVKTKISQLNGSINIFSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNE 632

Query: 1675 LVRVLPHELAGHYQQDPPRYEYAGQR-YELFYLGDLL--HTVSRPKLLGHYQPVPVLLVQ 1731
            +  +   +L+     D         +   LFYL   L    V   +  GH     V+++ 
Sbjct: 633  IFHL---DLSRTNVVDGQEVVIVRDKALPLFYLKRWLVQGQVHEEQHEGH-----VVILS 684

Query: 1732 CNERRVAIHVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIIDL 1782
               +R+   VD + G  E+V+K LG    G  G+SGATI GDGR+ LI+D+
Sbjct: 685  VGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDV 735



 Score = 58.5 bits (140), Expect = 3e-12
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 11/209 (5%)

Query: 1178 GADPELLDIFLEEAADILDSSSAALSRWQAEPGNRQEVETLLRDLHTLKGGARMVEIAPI 1237
            GAD E+L  FL EA +IL+  S  L   ++ P +   +  + R  HT+KGGA  +++  +
Sbjct: 4    GADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNEL 63

Query: 1238 GDLAHELEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMIDAVADGLPV-GSVDKLIERI 1296
             +  H  E +++ L  G      EL  ++    D +  M   V +   V  +   L+  +
Sbjct: 64   VECCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPALLAAL 123

Query: 1297 KTLVHPSDEPVTPVALPAGKAEAVVDPMADMVKIS--------AELLDDLVNLAGETSIF 1348
              L  P         +PA  A+ V    A+  +           +LLD L  +  + +  
Sbjct: 124  SRLAEPGAAEAVAAPVPAPVADVVAAAPAEAEEQHQDITDSEFEQLLDSLDAIKAQAAAD 183

Query: 1349 RGRIEQQVNDARIALTEVETTIERMRDQL 1377
                 + V+ A   +T+ E   E + DQL
Sbjct: 184  EQMQGETVSGAGDEITDAE--FESLLDQL 210



 Score = 53.5 bits (127), Expect = 1e-10
 Identities = 81/301 (26%), Positives = 121/301 (40%), Gaps = 57/301 (18%)

Query: 617 DDELREVFLEETDEVLEVLHRNL------PNSADKIAQGEMRRAFHTLKGSGRMVRALVL 670
           D+E+ + FL E  E+LE L   L      P+ AD +    + R FHT+KG    ++   L
Sbjct: 6   DEEILQDFLVEAGEILEQLSEQLVELESRPDDADLL--NAIFRGFHTVKGGAGFLQLNEL 63

Query: 671 AELAWAVEN---------------LLNRVLERSVTLGPDVQQVLD--EAVALLPELIADF 713
            E     EN               L++ VLE   T+     QV +  E     P L+A  
Sbjct: 64  VECCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPALLA-- 121

Query: 714 AIDDQRQRDEVDALAARAHA----LASGMPVPAAEPHDPMLLEIFRNEAQSHLDSLNHFL 769
           A+    +    +A+AA   A    + +  P  A E H     +I  +E +  LDSL+   
Sbjct: 122 ALSRLAEPGAAEAVAAPVPAPVADVVAAAPAEAEEQHQ----DITDSEFEQLLDSLDAIK 177

Query: 770 HQAAEHVPLQ----------VSD-ELQRALHTLKGSAYMAGVLPIAELARPLDHLTREYK 818
            QAA    +Q          ++D E +  L  L G          AE+A P   ++ E  
Sbjct: 178 AQAAADEQMQGETVSGAGDEITDAEFESLLDQLHGKGQFN-----AEVAAPPVAVSSEVV 232

Query: 819 AHRLPLDLDEVELL--LEAEGLFQRGLRDLDSDPLAPIKGAEDLINRTQSLLDHQLEALL 876
           +  +  D +   LL  L  +G FQ G         AP   A D    +  + +H+ EALL
Sbjct: 233 SDEI-TDAEFESLLDQLHGKGTFQAGALPAAQ---APAPAAPDNSAASDEISEHEFEALL 288

Query: 877 D 877
           D
Sbjct: 289 D 289